Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 8.8e-301 1036.2 526 100.0
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 9.8e-159 564.3 479 61.6
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 9.5e-154 547.7 489 58.1
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 1.0e-152 544.3 485 59.4
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 2.4e-149 533.1 490 58.6
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 4.6e-148 528.9 489 57.9
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 1.6e-145 520.4 490 55.5
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 2.1e-145 520.0 522 53.3
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 8.0e-145 518.1 523 53.3
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 1.4e-144 517.3 508 54.9
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 1.8e-144 516.9 511 54.6
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 4.0e-144 515.8 511 54.8
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.5e-143 513.8 521 53.4
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 2.0e-143 513.5 531 52.0
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 3.4e-143 512.7 531 51.6
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 5.8e-143 511.9 523 53.0
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 1.1e-141 507.7 521 53.2
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 4.1e-141 505.8 524 51.9
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 1.2e-140 504.2 518 53.5
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.6e-140 503.8 523 53.0
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 2.7e-140 503.1 523 52.0
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 2.7e-140 503.1 534 51.9
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 4.6e-140 502.3 525 51.6
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 7.8e-140 501.5 530 51.3
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 1.0e-139 501.1 526 52.9
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 1.7e-139 500.4 487 54.6
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 2.3e-139 500.0 523 52.2
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 2.3e-139 500.0 508 54.3
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 2.3e-139 500.0 529 52.7
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 3.9e-139 499.2 533 50.5
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 6.6e-139 498.4 519 50.5
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 6.6e-139 498.4 511 51.1
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 1.1e-138 497.7 523 52.4
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 2.5e-138 496.5 489 53.0
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 2.5e-138 496.5 523 52.2
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 4.3e-138 495.7 523 52.2
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 5.6e-138 495.4 533 51.4
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 7.3e-138 495.0 525 50.5
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 2.1e-137 493.4 523 52.0
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 6.2e-137 491.9 526 51.7
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 1.8e-136 490.3 532 50.2
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 5.2e-136 488.8 526 51.0
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 5.2e-136 488.8 495 53.7
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 6.8e-136 488.4 528 51.3
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.0e-135 486.9 523 51.2
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 2.6e-135 486.5 504 52.8
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 3.4e-135 486.1 505 52.9
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 4.4e-135 485.7 534 51.1
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 7.5e-135 485.0 528 50.9
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 1.3e-134 484.2 519 49.9
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 1.3e-134 484.2 519 49.9
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 1.7e-134 483.8 500 52.2
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 2.2e-134 483.4 523 50.7
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 3.7e-134 482.6 513 51.9
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.7e-134 482.6 531 49.2
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 3.7e-134 482.6 503 51.7
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 3.7e-134 482.6 523 52.0
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 6.4e-134 481.9 531 49.2
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 1.1e-133 481.1 508 52.8
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 2.4e-133 479.9 504 52.2
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 4.1e-133 479.2 517 49.3
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 4.1e-133 479.2 517 49.3
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 9.2e-133 478.0 533 49.7
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 9.2e-133 478.0 522 51.5
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 9.2e-133 478.0 500 52.4
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 1.6e-132 477.2 549 49.9
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 2.7e-132 476.5 495 51.9
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 2.7e-132 476.5 555 49.0
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 6.0e-132 475.3 524 50.4
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 3.0e-131 473.0 521 48.0
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 3.9e-131 472.6 520 48.8
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 5.1e-131 472.2 530 50.6
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 1.5e-130 470.7 531 48.6
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 1.5e-130 470.7 519 50.9
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 1.5e-130 470.7 488 52.0
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 2.5e-130 469.9 502 51.8
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 2.5e-130 469.9 526 47.7
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 4.3e-130 469.2 507 50.7
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 5.6e-130 468.8 480 53.3
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 9.5e-130 468.0 520 48.8
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 2.1e-129 466.8 521 48.4
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 2.1e-129 466.8 521 48.2
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 6.2e-129 465.3 518 48.3
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 6.2e-129 465.3 523 48.2
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 6.2e-129 465.3 531 49.3
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 8.1e-129 464.9 522 49.8
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 2.3e-128 463.4 557 48.1
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 3.1e-128 463.0 518 48.3
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 3.1e-128 463.0 520 48.5
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 5.2e-128 462.2 518 48.1
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 5.2e-128 462.2 523 50.5
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 5.2e-128 462.2 514 52.5
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 2.0e-127 460.3 567 47.4
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 2.6e-127 459.9 492 51.6
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 1.7e-126 457.2 499 51.3
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 9.2e-125 451.4 485 52.2
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 7.8e-124 448.4 494 49.4
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 7.3e-122 441.8 487 51.7
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.4e-120 436.8 410 58.3
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 2.3e-115 420.2 380 57.9
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 2.4e-112 410.2 461 50.3
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.9e-110 403.3 360 57.8
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 7.1e-109 398.7 394 55.6
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 6.0e-108 395.6 577 41.4
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.8e-104 384.0 472 47.7
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 3.8e-102 376.3 413 51.1
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 2.1e-100 370.5 468 43.8
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 8.7e-99 365.2 517 43.5
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 5.5e-85 319.3 434 44.2
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.4e-67 261.5 261 55.2
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.1e-66 258.5 298 49.7
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 2.1e-52 211.1 510 28.8
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 8.8e-51 205.7 202 51.0
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 8.0e-36 156.0 227 39.6
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 3.2e-32 144.1 148 51.4
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 8.6e-30 136.0 116 56.0
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.2e-26 125.6 366 31.1
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 7.0e-24 116.3 176 39.2
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 2.1e-20 104.8 97 52.6
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 8.9e-19 99.4 90 53.3
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.2e-18 99.0 78 59.0
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 7.5e-18 96.3 155 38.7
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 2.2e-17 94.7 71 62.0
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.9e-17 94.4 79 57.0
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 2.1e-15 88.2 509 23.0
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 3.5e-15 87.4 86 50.0
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.8e-12 77.8 48 75.0
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 4.7e-12 77.0 53 67.9
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 8.1e-12 76.3 48 72.9
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 5.2e-11 73.6 62 58.1
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 3.2e-08 64.3 47 61.7


User provided reference genes

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