Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03190 Sequoiadendron giganteum HOM05D004178 ORTHO05D005204 1.2e-221 773.1 443 100.0
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 1.8e-134 483.4 428 60.5
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 3.6e-130 469.2 427 62.3
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 3.4e-128 462.6 427 57.4
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 9.8e-128 461.1 427 58.5
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 9.8e-128 461.1 427 57.1
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 8.3e-127 458.0 427 57.6
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 1.9e-126 456.8 427 56.7
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 2.4e-126 456.4 427 57.6
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 5.4e-126 455.3 427 57.4
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 9.2e-126 454.5 427 57.6
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 1.2e-125 454.1 427 56.9
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 1.2e-125 454.1 427 57.4
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 3.5e-125 452.6 427 56.4
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 3.5e-125 452.6 427 63.5
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 9.5e-123 444.5 427 59.7
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 2.8e-122 443.0 427 54.8
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 5.2e-121 438.7 427 61.8
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 1.2e-120 437.6 427 61.1
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 2.6e-120 436.4 427 56.0
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 1.7e-119 433.7 427 54.6
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 2.2e-119 433.3 427 54.6
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 1.1e-118 431.0 427 55.3
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 1.6e-117 427.2 427 55.7
Sc19g0002080 Simmondsia chinensis HOM05D004178 ORTHO05D005204 7.8e-117 424.9 428 57.7
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 2.3e-116 423.3 429 55.2
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 2.3e-116 423.3 427 54.1
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 2.3e-116 423.3 427 53.4
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 3.0e-116 422.9 427 54.1
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 3.0e-116 422.9 427 53.4
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 5.1e-116 422.2 427 52.9
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 6.6e-116 421.8 429 54.8
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 8.1e-114 414.8 427 54.3
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 6.8e-113 411.8 427 53.9
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.2e-112 411.0 427 52.5
CAN.G515.10 Capsicum annuum HOM05D004178 ORTHO05D005204 1.5e-112 410.6 310 67.4
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 2.0e-112 410.2 427 53.6
HPP92_022323 Vanilla planifolia HOM05D004178 ORTHO05D005204 4.4e-112 409.1 427 52.0
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 5.8e-112 408.7 427 53.4
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 5.8e-112 408.7 427 53.9
HPP92_022331 Vanilla planifolia HOM05D004178 ORTHO05D005204 5.8e-112 408.7 427 54.8
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 7.6e-112 408.3 427 53.9
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 7.6e-112 408.3 427 53.9
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 7.6e-112 408.3 429 53.4
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 9.9e-112 407.9 427 59.3
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 9.9e-112 407.9 427 59.0
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.3e-111 407.5 427 53.9
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 1.3e-111 407.5 427 53.6
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 1.3e-111 407.5 427 53.6
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 2.9e-111 406.4 427 54.1
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 8.3e-111 404.8 427 53.9
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 1.4e-110 404.1 427 51.1
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 1.9e-110 403.7 430 51.4
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 2.4e-110 403.3 427 58.8
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 5.4e-110 402.1 385 56.9
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 7.1e-110 401.7 427 53.2
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 2.7e-109 399.8 427 51.1
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 3.5e-109 399.4 427 57.1
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 6.0e-109 398.7 427 51.8
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 6.0e-109 398.7 427 51.8
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 6.0e-109 398.7 427 51.5
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 1.0e-108 397.9 494 46.6
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 2.3e-108 396.7 426 51.2
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 3.0e-108 396.4 426 50.9
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 1.5e-107 394.0 438 50.7
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 4.3e-107 392.5 427 50.8
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 2.8e-106 389.8 427 50.6
FAN10G1085 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.1e-105 387.9 341 59.5
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 1.1e-105 387.9 430 50.5
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 1.4e-105 387.5 433 50.3
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 1.2e-104 384.4 427 50.1
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 1.5e-104 384.0 396 57.3
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 2.6e-104 383.3 426 49.3
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 1.7e-103 380.6 427 50.1
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 2.2e-103 380.2 427 49.6
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 2.4e-102 376.7 427 50.1
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 2.1e-101 373.6 426 48.4
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 2.1e-101 373.6 426 47.9
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 2.1e-101 373.6 428 49.8
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 2.1e-98 363.6 427 47.1
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 2.4e-97 360.1 426 48.4
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 3.1e-97 359.8 426 46.5
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 5.3e-97 359.0 427 46.8
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 6.9e-97 358.6 427 47.5
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 4.4e-96 355.9 416 48.6
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 1.7e-95 354.0 428 47.9
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 3.2e-94 349.7 427 46.8
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 7.1e-94 348.6 427 46.6
Atru.chr1.753 Acer truncatum HOM05D004178 ORTHO05D005204 3.5e-93 346.3 260 68.5
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 7.8e-93 345.1 430 46.7
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 1.7e-92 344.0 344 53.2
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 2.3e-92 343.6 426 45.5
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 3.0e-92 343.2 455 44.2
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.1e-91 341.3 348 54.6
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 4.8e-90 335.9 457 43.5
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 8.1e-90 335.1 427 45.9
Hund11836 Selenicereus undatus HOM05D004178 ORTHO05D005204 5.3e-89 332.4 248 66.5
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 9.0e-89 331.6 429 45.7
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 1.9e-86 323.9 472 42.4
FAN03G2333 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.1e-85 320.5 432 45.1
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 6.0e-85 318.9 363 49.6
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 3.0e-84 316.6 429 45.5
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.3e-82 311.2 431 44.1
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 2.8e-82 310.1 364 55.5
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 9.0e-81 305.1 427 45.4
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 1.2e-77 294.7 427 40.3
Oeu021707.2 Olea europaea HOM05D004178 ORTHO05D005204 1.6e-77 294.3 300 53.7
AL6G18010 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 3.9e-60 236.5 159 72.3
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 9.7e-59 231.9 267 49.1
Ca_27645_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 1.7e-55 221.1 135 79.3
Cpa.g.sc121.1 Carica papaya HOM05D004178 ORTHO05D005204 1.1e-46 191.8 110 82.7
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 4.4e-43 179.9 399 32.3
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-40 171.4 267 37.8
GSVIVG01014042001 Vitis vinifera HOM05D004178 ORTHO05D005204 7.7e-40 169.1 134 64.9
CARHR205510 Cardamine hirsuta HOM05D004178 ORTHO05D005204 1.5e-35 154.8 90 82.2
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 3.0e-28 130.6 271 32.8
PRCOL_00006025 Prasinoderma coloniale HOM05D004178 ORTHO05D005204 1.6e-24 118.2 242 31.0
GSVIVG01014044001 Vitis vinifera HOM05D004178 ORTHO05D005204 3.5e-24 117.1 66 87.9
COL.COLO4_14102 Corchorus olitorius HOM05D004178 ORTHO05D005204 7.2e-22 109.4 212 34.0
Ca_02792_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 7.0e-17 92.8 211 29.4
AUR62042656 Chenopodium quinoa HOM05D004178 ORTHO05D005204 3.0e-15 87.4 70 62.9
Cre12.g525050 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 5.0e-15 86.7 358 24.0
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 2.8e-13 80.9 78 48.7
Cpa.g.sc121.4 Carica papaya HOM05D004178 ORTHO05D005204 4.0e-12 77.0 99 44.4
GSVIVG01014041001 Vitis vinifera HOM05D004178 ORTHO05D005204 6.8e-12 76.3 92 45.7
QL07p015796 Quercus lobata HOM05D004178 ORTHO05D005204 1.1e-09 68.9 94 45.7
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 2.4e-09 67.8 346 22.0
Cre12.g525100 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 9.2e-09 65.9 240 25.8
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 6.0e-08 63.2 162 29.6
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 1.3e-07 62.0 350 23.4
arahy.Tifrunner.gnm1.ann1.1A5L99 Arachis hypogaea HOM05D005087 ORTHO05D006427 5.0e-07 60.1 248 23.0
PGSC0003DMG403030108 Solanum tuberosum HOM05D004178 ORTHO05D005204 1.9e-06 58.2 137 29.2
Medtr5g036330 Medicago truncatula HOM05D005087 ORTHO05D006427 2.5e-06 57.8 203 24.6
Medtr5g036370 Medicago truncatula HOM05D005087 ORTHO05D006427 2.5e-06 57.8 155 26.5
Lj3g0013327 Lotus japonicus HOM05D005087 ORTHO05D006427 5.6e-06 56.6 224 24.6
Os09g0121050 Oryza sativa ssp. japonica HOM05D004178 ORTHO05D005204 5.6e-06 56.6 142 28.2
Pp3c24_4940 Physcomitrium patens HOM05D005087 ORTHO05D006427 9.5e-06 55.8 399 21.3


User provided reference genes

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