Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0137600 Rhododendron simsii HOM05D004601 ORTHO05D005806 1.3e-232 809.3 403 100.0
Rhsim01G0115200 Rhododendron simsii HOM05D004601 ORTHO05D005806 2.3e-131 473.0 313 80.5
Rhsim01G0114900 Rhododendron simsii HOM05D004601 ORTHO05D005806 7.0e-48 195.7 405 38.8
vmacro05994 Vaccinium macrocarpon HOM05D004601 ORTHO05D005806 2.9e-46 190.3 305 45.2
Rhsim03G0267200 Rhododendron simsii HOM05D004601 ORTHO05D005806 3.3e-45 186.8 305 44.3
Actinidia02499 Actinidia chinensis HOM05D004601 ORTHO05D005806 4.7e-44 183.0 354 41.2
Hma1.2p1_0235F.1_g098690 Hydrangea macrophylla HOM05D004601 ORTHO05D005806 4.4e-42 176.4 303 42.9
COL.COLO4_06398 Corchorus olitorius HOM05D004601 ORTHO05D005806 1.7e-41 174.5 258 45.0
CSS0021444 Camellia sinensis var. sinensis HOM05D004601 ORTHO05D005806 3.7e-41 173.3 412 37.1
Dinv25455 Davidia involucrata HOM05D004601 ORTHO05D005806 3.8e-38 163.3 351 37.9
MBI16_g10345_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 3.3e-37 160.2 297 41.1
Lj7A622G14 Lonicera japonica HOM05D004601 ORTHO05D005806 4.3e-37 159.8 341 37.8
Gohir.A13G208300 Gossypium hirsutum HOM05D004601 ORTHO05D005806 8.0e-36 155.6 354 35.3
Cfa013456 Carpinus fangiana HOM05D004601 ORTHO05D005806 2.3e-35 154.1 351 37.0
CiPaw.08G032200 Carya illinoinensis HOM05D004601 ORTHO05D005806 3.0e-35 153.7 351 37.0
FAN12G1367 Fragaria x ananassa HOM05D004601 ORTHO05D005806 4.0e-35 153.3 284 39.1
GSVIVG01029314001 Vitis vinifera HOM05D004601 ORTHO05D005806 5.2e-35 152.9 385 34.3
Thecc.09G186600 Theobroma cacao HOM05D004601 ORTHO05D005806 1.2e-34 151.8 344 34.6
Ciclev10007283m.g Citrus clementina HOM05D004601 ORTHO05D005806 1.5e-34 151.4 343 36.2
Cpa.g.sc95.10 Carica papaya HOM05D004601 ORTHO05D005806 2.0e-34 151.0 352 34.7
MELO3C003972.2 Cucumis melo HOM05D004601 ORTHO05D005806 2.6e-34 150.6 349 36.1
Duzib150G1331 Durio zibethinus HOM05D004601 ORTHO05D005806 5.8e-34 149.4 344 34.9
MBI16_g47869_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 9.8e-34 148.7 351 34.5
CsaV3_2G008760 Cucumis sativus L. HOM05D004601 ORTHO05D005806 1.3e-33 148.3 348 35.9
Sed0026596 Sechium edule HOM05D004601 ORTHO05D005806 2.2e-33 147.5 345 35.4
Aqoxy7G02847 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 3.7e-33 146.7 347 34.6
Gorai.013G243100 Gossypium raimondii HOM05D004601 ORTHO05D005806 3.7e-33 146.7 354 34.2
CAN.G285.4 Capsicum annuum HOM05D004601 ORTHO05D005806 6.4e-33 146.0 346 34.7
ECA236G0938 Erigeron canadensis HOM05D004601 ORTHO05D005806 8.3e-33 145.6 408 32.6
Cc06_g20790 Coffea canephora HOM05D004601 ORTHO05D005806 2.4e-32 144.1 343 35.3
Gohir.D13G212700 Gossypium hirsutum HOM05D004601 ORTHO05D005806 2.4e-32 144.1 354 33.9
TPR.G7576 Trifolium pratense HOM05D004601 ORTHO05D000001 5.4e-32 142.9 349 34.1
Lsat_1_v5_gn_8_69120 Lactuca sativa HOM05D004601 ORTHO05D005806 9.2e-32 142.1 295 36.3
Psat1g144400 Pisum sativum HOM05D004601 ORTHO05D005806 9.2e-32 142.1 352 34.4
Nn8g40736 Nelumbo nucifera HOM05D004601 ORTHO05D005806 2.0e-31 141.0 357 33.3
Migut.J00793 Erythranthe guttata HOM05D004601 ORTHO05D005806 3.5e-31 140.2 289 36.0
HanXRQChr05g0141031 Helianthus annuus HOM05D004601 ORTHO05D005806 6.0e-31 139.4 298 36.2
RcHm_v2.0_Chr4g0399311 Rosa chinensis HOM05D004601 ORTHO05D005806 6.0e-31 139.4 344 33.1
Potri.018G141900 Populus trichocarpa HOM05D004601 ORTHO05D005806 1.0e-30 138.7 352 34.4
Sc16g0011160 Simmondsia chinensis HOM05D004601 ORTHO05D005806 1.3e-30 138.3 306 37.6
VMungo1309G1314 Vigna mungo HOM05D004601 ORTHO05D005806 1.3e-30 138.3 352 33.5
CANSAT11G0507 Cannabis sativa HOM05D004601 ORTHO05D005806 1.7e-30 137.9 352 33.2
Sopen07g006920 Solanum pennellii HOM05D004601 ORTHO05D005806 3.0e-30 137.1 350 34.3
FAN22G2150 Fragaria x ananassa HOM05D004601 ORTHO05D005806 3.9e-30 136.7 330 33.6
Glyma.15G166700 Glycine max HOM05D004601 ORTHO05D005806 3.9e-30 136.7 352 33.8
Prupe.1G074600 Prunus persica HOM05D004601 ORTHO05D005806 5.0e-30 136.3 293 35.8
Sabra18G0116000 Salix brachista HOM05D004601 ORTHO05D005806 6.6e-30 136.0 357 33.9
BcaB08g35989 Brassica carinata HOM05D004601 ORTHO05D005806 1.1e-29 135.2 289 37.0
PGR142G2375 Punica granatum HOM05D004601 ORTHO05D005806 1.1e-29 135.2 295 35.9
PGR142G4125 Punica granatum HOM05D004601 ORTHO05D005806 1.1e-29 135.2 295 35.9
FvH4_4g07160 Fragaria vesca HOM05D004601 ORTHO05D005806 1.5e-29 134.8 346 32.7
PSO170G3696 Papaver somniferum HOM05D004601 ORTHO05D005806 1.5e-29 134.8 299 35.1
EL10Ac4g10170 Beta vulgaris HOM05D004601 ORTHO05D005806 1.9e-29 134.4 347 34.0
arahy.Tifrunner.gnm1.ann1.BQ8TF8 Arachis hypogaea HOM05D004601 ORTHO05D005806 3.3e-29 133.7 350 34.3
Ca_02111_v3 Cicer arietinum L. HOM05D004601 ORTHO05D005806 3.3e-29 133.7 354 33.6
Medtr2g038030 Medicago truncatula HOM05D004601 ORTHO05D005806 4.3e-29 133.3 350 33.4
Lj6g0004756 Lotus japonicus HOM05D004601 ORTHO05D005806 5.6e-29 132.9 352 33.2
Lalb_Chr08g0231931 Lupinus albus HOM05D004601 ORTHO05D005806 1.2e-28 131.7 301 36.2
MD16G1247900 Malus domestica HOM05D004601 ORTHO05D005806 1.2e-28 131.7 297 36.4
ATR0626G236 Amborella trichopoda HOM05D004601 ORTHO05D005806 1.6e-28 131.3 299 33.4
FAN17G2239 Fragaria x ananassa HOM05D004601 ORTHO05D005806 1.6e-28 131.3 346 32.1
PSO063G2966 Papaver somniferum HOM05D004601 ORTHO05D005806 1.6e-28 131.3 299 34.4
TAR383G0412 Trochodendron aralioides HOM05D004601 ORTHO05D005806 1.6e-28 131.3 287 35.9
Phvul.009G235800 Phaseolus vulgaris HOM05D004601 ORTHO05D005806 2.8e-28 130.6 352 32.1
Hma1.2p1_0235F.1_g098680 Hydrangea macrophylla HOM05D004601 ORTHO05D005806 8.0e-28 129.0 278 38.1
CARHR270950 Cardamine hirsuta HOM05D004601 ORTHO05D005806 1.4e-27 128.3 297 34.0
MSTRG.5939 Avicennia marina HOM05D004601 ORTHO05D005806 2.3e-27 127.5 343 32.1
A10p14520 Brassica napus HOM05D004601 ORTHO05D005806 3.1e-27 127.1 352 31.8
BolC9t57749H Brassica oleracea HOM05D004601 ORTHO05D005806 5.2e-27 126.3 348 31.9
Carub.0008s1767 Capsella rubella HOM05D004601 ORTHO05D005806 8.9e-27 125.6 296 34.1
Manes.14G159112 Manihot esculenta HOM05D004601 ORTHO05D005806 8.9e-27 125.6 293 34.1
Thhalv10012474m.g Eutrema salsugineum HOM05D004601 ORTHO05D005806 1.2e-26 125.2 351 32.8
AL8G33090 Arabidopsis lyrata HOM05D004601 ORTHO05D005806 1.5e-26 124.8 296 34.1
BcaC04g19998 Brassica carinata HOM05D004601 ORTHO05D005806 1.5e-26 124.8 347 31.4
Eucgr.C00108 Eucalyptus grandis HOM05D004601 ORTHO05D005806 1.5e-26 124.8 357 33.1
BcaC04g19995 Brassica carinata HOM05D004601 ORTHO05D005806 2.0e-26 124.4 348 32.8
C09p48970 Brassica napus HOM05D004601 ORTHO05D005806 2.0e-26 124.4 348 32.8
AT5G57160 Arabidopsis thaliana HOM05D004601 ORTHO05D005806 2.6e-26 124.0 300 33.0
BraA10t43541Z Brassica rapa HOM05D004601 ORTHO05D005806 5.8e-26 122.9 353 31.7
AUR62000175 Chenopodium quinoa HOM05D004601 ORTHO05D005806 5.8e-26 122.9 295 33.6
Sp6g18890 Schrenkiella parvula HOM05D004601 ORTHO05D005806 5.8e-26 122.9 303 34.0
AUR62039835 Chenopodium quinoa HOM05D004601 ORTHO05D005806 9.8e-26 122.1 345 32.2
CDE07G0894 Ceratophyllum demersum HOM05D004601 ORTHO05D005806 2.2e-25 120.9 344 33.1
TWI63G1718 Tripterygium wilfordii HOM05D004601 ORTHO05D005806 1.1e-24 118.6 279 35.8
THA.LOC104817773 Tarenaya hassleriana HOM05D004601 ORTHO05D005806 1.4e-24 118.2 353 32.0
HPP92_021964 Vanilla planifolia HOM05D004601 ORTHO05D005806 4.1e-24 116.7 352 30.1
Ah.06g194430 Amaranthus hybridus HOM05D004601 ORTHO05D005806 1.3e-22 111.7 348 29.9
Zm00001eb071490 Zea mays HOM05D004601 ORTHO05D005806 1.7e-22 111.3 347 31.4
SHI03064 Sapria himalayana HOM05D004601 ORTHO05D005806 5.0e-22 109.8 386 27.5
Aqoxy295s002 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 1.1e-21 108.6 134 47.0
Peaxi162Scf00231g01115 Petunia axillaris HOM05D004601 ORTHO05D005806 2.5e-21 107.5 135 51.1
Nitab4.5_0000056g0060 Nicotiana tabacum HOM05D004601 ORTHO05D005806 6.2e-20 102.8 135 48.1
Solyc07g018000.3 Solanum lycopersicum HOM05D004601 ORTHO05D005806 2.3e-19 100.9 135 48.1
SalBow6G1386 Salvia bowleyana HOM05D004601 ORTHO05D005806 8.9e-19 99.0 169 40.8
arahy.Tifrunner.gnm1.ann1.LL4FRQ Arachis hypogaea HOM05D004601 ORTHO05D005806 1.5e-18 98.2 132 46.2
SGA_v2.0_scaffold112G31593 Striga asiatica HOM05D004601 ORTHO05D005806 2.0e-18 97.8 298 32.6
ECA236G3967 Erigeron canadensis HOM05D004601 ORTHO05D005806 9.9e-18 95.5 87 59.8
DCAR_020147 Daucus carota HOM05D004601 ORTHO05D005806 2.2e-17 94.4 83 59.0
ClCG11G011720 Citrullus lanatus HOM05D004601 ORTHO05D005806 4.9e-17 93.2 353 29.5
arahy.Tifrunner.gnm1.ann1.8TE3EA Arachis hypogaea HOM05D004601 ORTHO05D005806 1.9e-16 91.3 65 66.2
Atru.chr7.956 Acer truncatum HOM05D004601 ORTHO05D005806 2.4e-16 90.9 148 43.2
Haze_22027 Corylus avellana HOM05D004601 ORTHO05D005806 3.2e-16 90.5 64 67.2
Psat1g144440 Pisum sativum HOM05D004601 ORTHO05D005806 7.1e-16 89.4 87 54.0
Glyma.09G060132 Glycine max HOM05D004601 ORTHO05D005806 9.2e-16 89.0 132 45.5
Aa31LG3G13060 Aethionema arabicum HOM05D004601 ORTHO05D005806 1.2e-15 88.6 67 64.2
Lalb_Chr00c63g0413841 Lupinus albus HOM05D004601 ORTHO05D005806 2.1e-15 87.8 66 63.6
Mapoly0001s0137 Marchantia polymorpha HOM05D004601 ORTHO05D005806 2.1e-15 87.8 353 26.3
ClCG11G011730 Citrullus lanatus HOM05D004601 ORTHO05D005806 2.7e-15 87.4 67 64.2
Peaxi162Scf00231g01116 Petunia axillaris HOM05D004601 ORTHO05D005806 1.3e-14 85.1 64 64.1
Pp3c14_5920 Physcomitrium patens HOM05D004601 ORTHO05D005806 1.3e-14 85.1 348 26.1
Nitab4.5_0000056g0070 Nicotiana tabacum HOM05D004601 ORTHO05D005806 3.9e-14 83.6 64 62.5
Nitab4.5_0006199g0010 Nicotiana tabacum HOM05D004601 ORTHO05D005806 3.9e-14 83.6 64 62.5
Oeu019558.1 Olea europaea HOM05D004601 ORTHO05D005806 3.9e-14 83.6 104 50.0
Solyc07g017990.3 Solanum lycopersicum HOM05D004601 ORTHO05D005806 3.9e-14 83.6 64 62.5
Sopen07g006910 Solanum pennellii HOM05D004601 ORTHO05D005806 3.9e-14 83.6 64 62.5
Aqoxy295s003 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 8.6e-14 82.4 103 49.5
AagrBONN_evm.TU.Sc2ySwM_228.1820 Anthoceros agrestis HOM05D004601 ORTHO05D005806 1.5e-13 81.6 286 28.3
CAN.G285.3 Capsicum annuum HOM05D004601 ORTHO05D005806 1.5e-13 81.6 64 60.9
SalBow7G2616 Salvia bowleyana HOM05D005568 ORTHO05D006940 4.3e-13 80.1 64 57.8
SEGI_28566 Sequoiadendron giganteum HOM05D004601 ORTHO05D005806 1.6e-12 78.2 222 30.6
SMO144G0133 Selaginella moellendorffii HOM05D004601 ORTHO05D005806 3.1e-11 73.9 100 44.0
Psat5g051520 Pisum sativum HOM05D004601 ORTHO05D005806 2.9e-09 67.4 45 66.7
ECA236G2032 Erigeron canadensis HOM05D004601 ORTHO05D005806 2.4e-08 64.3 160 35.6
TAR383G0023 Trochodendron aralioides HOM05D004601 ORTHO05D005806 2.1e-07 61.2 39 74.4
Haze_22030 Corylus avellana HOM05D004601 ORTHO05D005806 1.3e-06 58.5 177 32.2


User provided reference genes

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