Gene: Solyc07g018000.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc07g018000.3
- Transcript Identifier Solyc07g018000.3.1
- Gene Type Coding gene
- Location SL4.0ch07 : 8868001-8879596 : positive
Gene Family Information
- ID HOM05D004601
- #Genes/#Species 158/96
- Phylogenetic origin
- ID ORTHO05D005806
- #Genes/#Species 152/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc07g018000.3.1
- uniprot A0A3Q7I2L6
- gene_id Solyc07g018000
Descriptions
- Description DNA ligase 4 (AHRD V3.3 *** A0A2G2Y445_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006303 | IBA | GOA Database | double-strand break repair via nonhomologous end joining | |
| GO:0006297 | IBA | GOA Database | nucleotide-excision repair, DNA gap filling | |
| GO:0051103 | IBA IEA | GOA Database | DNA ligation involved in DNA repair | |
| GO:0051103 | IEA | InterPro | DNA ligation involved in DNA repair | |
| GO:0071897 | IEA | GOA Database | DNA biosynthetic process | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006310 | IEA | GOA Database | DNA recombination | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006260 | IEA | GOA Database | DNA replication |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005524 | IBA IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003677 | IBA IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003910 | IBA IEA | GOA Database | DNA ligase (ATP) activity | |
| GO:0003910 | IEA | InterPro | DNA ligase (ATP) activity | |
| GO:0003909 | IEA | GOA Database | DNA ligase activity | |
| GO:0016874 | IEA | GOA Database | ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0032807 | IBA | GOA Database | DNA ligase IV complex | |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |