Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0011300 Rhododendron simsii HOM05D005290 ORTHO05D006040 2.9e-73 278.5 142 100.0
Rhsim12G0006000 Rhododendron simsii HOM05D005290 ORTHO05D006040 7.1e-64 247.3 129 97.7
Rhsim03G0213900 Rhododendron simsii HOM05D005290 ORTHO05D006040 5.0e-57 224.6 128 91.4
vmacro00977 Vaccinium macrocarpon HOM05D005290 ORTHO05D006040 6.7e-54 214.2 116 94.8
CSS0003964 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 5.7e-53 211.1 115 93.0
CSS0033470 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 5.7e-53 211.1 115 93.0
GSVIVG01026715001 Vitis vinifera HOM05D005290 ORTHO05D006040 4.5e-50 201.4 115 88.7
AUR62004596 Chenopodium quinoa HOM05D005290 ORTHO05D006040 1.7e-49 199.5 115 87.0
AUR62023548 Chenopodium quinoa HOM05D005290 ORTHO05D006040 2.2e-49 199.1 115 86.1
Cc10_g09470 Coffea canephora HOM05D005290 ORTHO05D006040 2.2e-49 199.1 115 87.8
Migut.C01329 Erythranthe guttata HOM05D005290 ORTHO05D006040 2.2e-49 199.1 115 86.1
Dinv41762 Davidia involucrata HOM05D005290 ORTHO05D006040 2.9e-49 198.7 115 87.0
TAR381G0263 Trochodendron aralioides HOM05D005290 ORTHO05D006040 6.5e-49 197.6 115 88.7
Hma1.2p1_0004F.1_g003900 Hydrangea macrophylla HOM05D005290 ORTHO05D006040 8.5e-49 197.2 115 87.8
COL.COLO4_24646 Corchorus olitorius HOM05D005290 ORTHO05D006040 1.4e-48 196.4 115 86.1
PGR042G0738 Punica granatum HOM05D005290 ORTHO05D006040 1.9e-48 196.1 115 83.5
Gohir.A13G118900 Gossypium hirsutum HOM05D005290 ORTHO05D006040 9.4e-48 193.7 115 85.2
EL10Ac1g00141 Beta vulgaris HOM05D005290 ORTHO05D006040 1.2e-47 193.4 115 83.5
DCAR_017435 Daucus carota HOM05D005290 ORTHO05D006040 1.2e-47 193.4 115 84.3
Thecc.08G192800 Theobroma cacao HOM05D005290 ORTHO05D006040 1.2e-47 193.4 115 84.3
Sc01g0002020 Simmondsia chinensis HOM05D005290 ORTHO05D006040 2.1e-47 192.6 115 84.3
TWI59G0173 Tripterygium wilfordii HOM05D005290 ORTHO05D006040 2.1e-47 192.6 115 83.5
Prupe.1G555900 Prunus persica HOM05D005290 ORTHO05D006040 2.7e-47 192.2 115 84.3
Lalb_Chr07g0189291 Lupinus albus HOM05D005290 ORTHO05D006040 3.6e-47 191.8 115 82.6
SGA_v2.0_scaffold118G32566 Striga asiatica HOM05D005290 ORTHO05D006040 3.6e-47 191.8 115 81.7
CANSAT80G2649 Cannabis sativa HOM05D005290 ORTHO05D006040 6.1e-47 191.0 115 83.5
CAN.G982.5 Capsicum annuum HOM05D005290 ORTHO05D006040 6.1e-47 191.0 115 82.6
Gorai.013G137700 Gossypium raimondii HOM05D005290 ORTHO05D006040 6.1e-47 191.0 115 84.3
Manes.02G198901 Manihot esculenta HOM05D005290 ORTHO05D006040 6.1e-47 191.0 115 83.5
Phvul.005G002000 Phaseolus vulgaris HOM05D005290 ORTHO05D006040 6.1e-47 191.0 115 81.7
Sopen04g017660 Solanum pennellii HOM05D005290 ORTHO05D006040 6.1e-47 191.0 115 82.6
Gohir.D13G122700 Gossypium hirsutum HOM05D005290 ORTHO05D006040 1.0e-46 190.3 115 84.3
RcHm_v2.0_Chr3g0494621 Rosa chinensis HOM05D005290 ORTHO05D006040 1.4e-46 189.9 115 83.5
Hund27128 Selenicereus undatus HOM05D005290 ORTHO05D006040 1.4e-46 189.9 115 82.6
Hund27133 Selenicereus undatus HOM05D005290 ORTHO05D006040 1.4e-46 189.9 115 82.6
Atru.chr13.2376 Acer truncatum HOM05D005290 ORTHO05D006040 1.8e-46 189.5 115 80.0
Cfa012974 Carpinus fangiana HOM05D005290 ORTHO05D006040 1.8e-46 189.5 115 81.7
Solyc04g045660.4 Solanum lycopersicum HOM05D005290 ORTHO05D006040 2.3e-46 189.1 115 81.7
MSTRG.25478 Avicennia marina HOM05D005290 ORTHO05D006040 3.0e-46 188.7 115 80.9
PSO170G3966 Papaver somniferum HOM05D005290 ORTHO05D006040 3.0e-46 188.7 115 81.7
SalBow7G4073 Salvia bowleyana HOM05D005290 ORTHO05D006040 3.9e-46 188.3 115 81.7
Eucgr.F02988 Eucalyptus grandis HOM05D005290 ORTHO05D006040 8.8e-46 187.2 115 80.0
MBI03_g18676_MAGBIO Magnolia biondii HOM05D005290 ORTHO05D006040 8.8e-46 187.2 116 80.2
PSO782G1799 Papaver somniferum HOM05D005290 ORTHO05D006040 8.8e-46 187.2 115 80.9
Sabra19G0089500 Salix brachista HOM05D005290 ORTHO05D006040 8.8e-46 187.2 115 81.7
Cpa.g.sc50.54 Carica papaya HOM05D005290 ORTHO05D006040 1.1e-45 186.8 115 80.0
CiPaw.07G235300 Carya illinoinensis HOM05D005290 ORTHO05D006040 1.5e-45 186.4 115 80.9
CsaV3_6G002720 Cucumis sativus L. HOM05D005290 ORTHO05D006040 1.5e-45 186.4 116 79.3
FvH4_5g31560 Fragaria vesca HOM05D005290 ORTHO05D006040 2.0e-45 186.0 115 81.7
FAN04G2711 Fragaria x ananassa HOM05D005290 ORTHO05D006040 2.0e-45 186.0 115 82.6
FAN18G4563 Fragaria x ananassa HOM05D005290 ORTHO05D006040 2.0e-45 186.0 115 81.7
Potri.019G078700 Populus trichocarpa HOM05D005290 ORTHO05D006040 2.0e-45 186.0 115 80.9
VMungo1080G0256 Vigna mungo HOM05D005290 ORTHO05D006040 2.6e-45 185.7 115 79.1
Ah.05g178620 Amaranthus hybridus HOM05D005290 ORTHO05D006040 3.3e-45 185.3 115 79.1
Glyma.04G254900 Glycine max HOM05D005290 ORTHO05D006040 3.3e-45 185.3 115 79.1
MELO3C025009.2 Cucumis melo HOM05D005290 ORTHO05D006040 4.4e-45 184.9 116 78.4
TPR.G25526 Trifolium pratense HOM05D005290 ORTHO05D006040 5.7e-45 184.5 115 76.5
Ca_13983_v3 Cicer arietinum L. HOM05D005290 ORTHO05D006040 1.3e-44 183.3 115 75.7
Medtr3g005810 Medicago truncatula HOM05D005290 ORTHO05D006040 1.7e-44 183.0 115 74.8
Psat1g008120 Pisum sativum HOM05D005290 ORTHO05D006040 1.7e-44 183.0 115 75.7
Lsat_1_v5_gn_1_31200 Lactuca sativa HOM05D005290 ORTHO05D006040 2.2e-44 182.6 115 80.9
Lj3g0002821 Lotus japonicus HOM05D005290 ORTHO05D006040 2.2e-44 182.6 115 77.4
ClCG08G002460 Citrullus lanatus HOM05D005290 ORTHO05D006040 2.8e-44 182.2 116 77.6
ECA232G1421 Erigeron canadensis HOM05D005290 ORTHO05D006040 3.7e-44 181.8 115 80.0
Ciclev10019018m.g Citrus clementina HOM05D005290 ORTHO05D006040 4.8e-44 181.4 116 77.6
Sed0025467 Sechium edule HOM05D005290 ORTHO05D006040 1.1e-43 180.3 116 76.7
Nn1g08386 Nelumbo nucifera HOM05D005290 ORTHO05D006040 1.4e-43 179.9 115 77.4
Nitab4.5_0008566g0030 Nicotiana tabacum HOM05D005290 ORTHO05D006040 2.4e-43 179.1 116 80.2
RcHm_v2.0_Chr7g0226931 Rosa chinensis HOM05D005290 ORTHO05D006040 3.1e-43 178.7 115 78.3
unitig_26.g9865 Utricularia gibba HOM05D005290 ORTHO05D006040 2.6e-42 175.6 115 75.7
Aqoxy6G00108 Aquilegia oxysepala HOM05D005290 ORTHO05D006040 3.4e-42 175.3 115 73.9
AL6G42870 Arabidopsis lyrata HOM05D005290 ORTHO05D006040 4.5e-42 174.9 115 74.8
Os01g0958900 Oryza sativa ssp. japonica HOM05D005290 ORTHO05D006040 4.5e-42 174.9 115 71.3
Dinv16440 Davidia involucrata HOM05D005290 ORTHO05D006040 5.9e-42 174.5 120 74.2
HanXRQChr09g0266431 Helianthus annuus HOM05D005290 ORTHO05D006040 7.7e-42 174.1 115 74.8
Nitab4.5_0006434g0010 Nicotiana tabacum HOM05D005290 ORTHO05D006040 7.7e-42 174.1 116 79.3
Peaxi162Scf00076g10023 Petunia axillaris HOM05D005290 ORTHO05D006040 7.7e-42 174.1 115 78.3
Zm00001eb362590 Zea mays HOM05D005290 ORTHO05D006040 7.7e-42 174.1 115 71.3
Carub.0006s2769 Capsella rubella HOM05D005290 ORTHO05D006040 1.3e-41 173.3 115 73.0
Aa31LG9G14750 Aethionema arabicum HOM05D005290 ORTHO05D006040 1.7e-41 172.9 115 75.7
ATR1136G152 Amborella trichopoda HOM05D005290 ORTHO05D006040 2.2e-41 172.6 115 73.9
HPP92_004622 Vanilla planifolia HOM05D005290 ORTHO05D006040 2.2e-41 172.6 115 72.2
CARHR260140 Cardamine hirsuta HOM05D005290 ORTHO05D006040 1.4e-40 169.9 115 73.9
arahy.Tifrunner.gnm1.ann1.0B02IH Arachis hypogaea HOM05D005290 ORTHO05D006040 3.2e-40 168.7 138 63.0
Sp6g08400 Schrenkiella parvula HOM05D005290 ORTHO05D006040 3.2e-40 168.7 115 73.0
ATR1136G132 Amborella trichopoda HOM05D005290 ORTHO05D006040 4.2e-40 168.3 120 70.0
MD12G1033300 Malus domestica HOM05D005290 ORTHO05D006040 4.2e-40 168.3 101 85.1
A03p28460 Brassica napus HOM05D005290 ORTHO05D006040 9.4e-40 167.2 115 70.4
C03p34390 Brassica napus HOM05D005290 ORTHO05D006040 9.4e-40 167.2 115 70.4
BolC3t15749H Brassica oleracea HOM05D005290 ORTHO05D006040 9.4e-40 167.2 115 70.4
BraA03t12051Z Brassica rapa HOM05D005290 ORTHO05D006040 9.4e-40 167.2 115 70.4
arahy.Tifrunner.gnm1.ann1.QF83TB Arachis hypogaea HOM05D005290 ORTHO05D006040 1.2e-39 166.8 143 60.8
Thhalv10028465m.g Eutrema salsugineum HOM05D005290 ORTHO05D006040 1.6e-39 166.4 115 71.3
BcaB01g02803 Brassica carinata HOM05D005290 ORTHO05D006040 2.1e-39 166.0 115 69.6
BcaC01g04730 Brassica carinata HOM05D005290 ORTHO05D006040 3.6e-39 165.2 115 69.6
SHI12388 Sapria himalayana HOM05D005290 ORTHO05D006040 1.1e-37 160.2 114 70.2
Lalb_Chr18g0049141 Lupinus albus HOM05D005290 ORTHO05D006040 2.6e-37 159.1 115 67.0
AT4G09140 Arabidopsis thaliana HOM05D005290 ORTHO05D006040 6.3e-36 154.5 108 72.2
Lsat_1_v5_gn_8_103720 Lactuca sativa HOM05D005290 ORTHO05D006040 1.4e-35 153.3 107 72.9
Mapoly0086s0067 Marchantia polymorpha HOM05D005290 ORTHO05D006040 5.9e-34 147.9 115 60.9
SEGI_07557 Sequoiadendron giganteum HOM05D005290 ORTHO05D006040 1.7e-33 146.4 115 60.9
Pp3c10_9000 Physcomitrium patens HOM05D005290 ORTHO05D006040 6.1e-31 137.9 115 55.7
Lsat_1_v5_gn_2_103881 Lactuca sativa HOM05D005290 ORTHO05D006040 3.0e-30 135.6 95 73.7
Lsat_1_v5_gn_2_95080 Lactuca sativa HOM05D005290 ORTHO05D006040 2.2e-28 129.4 83 78.3
CDE02G0285 Ceratophyllum demersum HOM05D005290 ORTHO05D006040 3.7e-28 128.6 116 56.0
CBR_g11107 Chara braunii HOM05D005290 ORTHO05D006040 5.3e-27 124.8 115 48.7
SMO340G0005 Selaginella moellendorffii HOM05D005290 ORTHO05D006040 5.9e-26 121.3 115 50.4
AagrBONN_evm.TU.Sc2ySwM_344.4012 Anthoceros agrestis HOM05D005290 ORTHO05D006040 8.5e-25 117.5 115 45.2
MCO16G484 Micromonas commoda HOM05D005290 ORTHO05D006040 1.4e-19 100.1 119 38.7
Cre01.g036050 Chlamydomonas reinhardtii HOM05D005290 ORTHO05D006040 3.1e-19 99.0 128 43.0
Cfa009487 Carpinus fangiana HOM05D005290 ORTHO05D006040 4.1e-19 98.6 115 42.6
Lj7A285T59 Lonicera japonica HOM05D005290 ORTHO05D006040 1.6e-15 86.7 46 84.8
PRCOL_00005034 Prasinoderma coloniale HOM05D005290 ORTHO05D006040 2.8e-15 85.9 129 35.7
Dinv08418 Davidia involucrata HOM05D005290 ORTHO05D006040 1.5e-13 80.1 45 86.7
Actinidia24740 Actinidia chinensis HOM05D005290 ORTHO05D006040 1.0e-09 67.4 51 70.6
MD14G1034200 Malus domestica HOM05D005290 ORTHO05D006040 2.5e-08 62.8 40 77.5


User provided reference genes

Program Settings