Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 2.3e-235 818.5 416 100.0
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 5.4e-160 568.2 463 69.1
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 1.0e-155 553.9 419 71.6
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 8.3e-145 517.7 412 67.5
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 3.2e-144 515.8 399 67.2
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 4.6e-143 511.9 360 74.4
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 2.3e-142 509.6 400 66.5
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 3.3e-141 505.8 400 66.0
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 7.3e-141 504.6 369 71.0
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 7.3e-141 504.6 398 65.6
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 9.5e-141 504.2 369 70.7
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.0e-139 500.7 365 71.5
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 1.0e-139 500.7 400 65.0
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 1.4e-139 500.4 400 65.5
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 1.5e-138 496.9 401 65.3
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 4.4e-138 495.4 400 65.8
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 5.8e-138 495.0 410 64.9
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 1.3e-137 493.8 401 66.8
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 2.2e-137 493.0 403 66.0
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 4.9e-137 491.9 402 63.7
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 1.1e-136 490.7 348 71.8
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 2.4e-136 489.6 411 64.2
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 2.0e-135 486.5 405 64.0
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 1.3e-134 483.8 407 63.1
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.7e-134 483.4 345 72.5
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 1.7e-134 483.4 400 62.8
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 2.1e-132 476.5 348 70.4
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 2.1e-132 476.5 382 64.9
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 2.1e-132 476.5 399 62.2
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 2.8e-132 476.1 403 62.0
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 3.6e-132 475.7 399 62.7
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 4.7e-132 475.3 351 68.7
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 1.8e-131 473.4 400 63.5
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 3.1e-131 472.6 351 67.8
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 6.8e-131 471.5 408 60.5
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 6.8e-131 471.5 399 62.2
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 1.5e-130 470.3 348 67.8
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 2.0e-130 469.9 354 67.5
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 2.6e-130 469.5 357 67.2
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 3.4e-130 469.2 348 67.5
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 3.4e-130 469.2 409 63.1
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 4.4e-130 468.8 399 62.7
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 4.4e-130 468.8 401 62.6
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 4.4e-130 468.8 352 67.9
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.3e-129 467.2 400 61.8
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 1.7e-129 466.8 446 58.5
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 2.2e-129 466.5 399 60.9
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 2.2e-129 466.5 402 62.9
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 2.9e-129 466.1 403 61.3
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 2.9e-129 466.1 398 63.6
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 2.9e-129 466.1 374 67.1
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 3.7e-129 465.7 350 68.3
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 1.1e-128 464.2 369 65.9
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 1.4e-128 463.8 355 68.2
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 1.4e-128 463.8 422 59.5
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 1.9e-128 463.4 370 64.6
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 3.2e-128 462.6 355 65.4
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 9.2e-128 461.1 348 66.4
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 9.2e-128 461.1 379 63.1
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 1.2e-127 460.7 374 63.9
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 3.5e-127 459.1 367 64.3
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 3.5e-127 459.1 346 68.2
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 6.0e-127 458.4 367 64.6
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 6.0e-127 458.4 401 60.6
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 6.0e-127 458.4 501 52.7
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.3e-126 457.2 435 57.5
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 1.3e-126 457.2 354 65.5
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 2.3e-126 456.4 411 59.4
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 3.0e-126 456.1 400 60.8
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 1.2e-124 450.7 429 56.4
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 1.2e-124 450.7 404 59.7
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 3.6e-124 449.1 403 60.5
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 1.8e-123 446.8 382 62.6
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 3.1e-123 446.0 352 65.6
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 8.9e-123 444.5 361 65.7
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 8.9e-123 444.5 398 61.1
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 1.5e-122 443.7 346 65.3
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 3.4e-122 442.6 394 61.2
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 1.3e-121 440.7 408 60.0
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 2.2e-121 439.9 358 64.2
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 2.9e-121 439.5 376 63.0
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 4.9e-121 438.7 358 64.2
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 2.7e-119 433.0 356 65.2
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 2.7e-119 433.0 353 63.2
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 4.6e-119 432.2 365 61.6
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 7.8e-119 431.4 355 62.0
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 1.7e-118 430.3 399 59.6
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 3.6e-116 422.5 350 62.9
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 4.7e-116 422.2 349 62.5
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 6.2e-116 421.8 367 62.4
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 6.2e-116 421.8 367 62.4
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.4e-115 419.9 399 57.4
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 7.6e-106 388.3 322 61.8
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 6.4e-105 385.2 348 60.6
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 1.3e-100 370.9 359 52.9
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 3.9e-94 349.4 316 58.5
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 2.6e-90 336.7 272 65.4
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 3.4e-90 336.3 351 52.4
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 2.2e-89 333.6 399 49.4
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 6.5e-89 332.0 236 69.5
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 6.7e-86 322.0 346 50.0
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 1.0e-81 308.1 298 56.7
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.6e-76 290.8 215 67.0
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 4.1e-75 286.2 476 39.1
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 2.5e-72 276.9 250 56.4
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 7.9e-63 245.4 199 65.3
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 8.8e-62 241.9 163 72.4
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 7.2e-56 222.2 226 55.8
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 6.7e-54 215.7 387 37.5
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 8.8e-54 215.3 197 60.4
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 7.2e-40 169.1 122 68.0
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 3.0e-30 137.1 147 53.1
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 4.4e-29 133.3 74 82.4
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 3.2e-19 100.5 363 29.2
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 7.0e-19 99.4 345 26.1
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 6.6e-17 92.8 230 31.3
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 1.1e-14 85.5 346 25.7
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 4.0e-14 83.6 249 26.9
BraA03t12678Z Brassica rapa HOM05D006708 ORTHO05D008321 1.5e-13 81.6 221 28.5
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 1.5e-13 81.6 233 26.2
AT3G06950 Arabidopsis thaliana HOM05D006708 ORTHO05D008321 2.0e-13 81.3 221 28.5
C03p42560 Brassica napus HOM05D006708 ORTHO05D008321 2.0e-13 81.3 221 28.5
BolC3t16526H Brassica oleracea HOM05D006708 ORTHO05D008321 2.0e-13 81.3 221 28.5
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 2.0e-13 81.3 218 28.4
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 2.0e-13 81.3 219 26.5
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 2.0e-13 81.3 55 70.9
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 3.4e-13 80.5 237 27.8
Sp3g05900 Schrenkiella parvula HOM05D006708 ORTHO05D008321 3.4e-13 80.5 226 27.9
AL3G18120 Arabidopsis lyrata HOM05D006708 ORTHO05D008321 4.4e-13 80.1 221 28.5
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 7.5e-13 79.3 216 28.7
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 7.5e-13 79.3 221 25.8
Carub.0003s0647 Capsella rubella HOM05D006708 ORTHO05D008321 9.9e-13 79.0 221 27.1
Thhalv10022298m.g Eutrema salsugineum HOM05D006708 ORTHO05D008321 9.9e-13 79.0 226 27.0
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 9.9e-13 79.0 201 27.9
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 2.9e-12 77.4 356 24.7
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 2.9e-12 77.4 201 27.9
Prupe.1G104700 Prunus persica HOM05D006708 ORTHO05D008321 2.9e-12 77.4 219 26.0
SGA_v2.0_scaffold109G31012 Striga asiatica HOM05D006708 ORTHO05D008321 3.7e-12 77.0 219 27.9
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 3.7e-12 77.0 219 26.5
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 4.9e-12 76.6 205 27.8
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 4.9e-12 76.6 219 25.1
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 8.3e-12 75.9 201 27.9
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 8.3e-12 75.9 219 25.6
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 1.1e-11 75.5 205 28.8
Gohir.D02G064500 Gossypium hirsutum HOM05D006708 ORTHO05D008321 1.1e-11 75.5 219 25.6
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 1.4e-11 75.1 219 25.6
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.4e-11 75.1 197 27.4
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 1.9e-11 74.7 205 27.3
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 3.2e-11 73.9 219 26.9
Haze_12609 Corylus avellana HOM05D006708 ORTHO05D008321 3.2e-11 73.9 244 27.9
Haze_12620 Corylus avellana HOM05D006708 ORTHO05D008321 3.2e-11 73.9 244 27.9
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 3.2e-11 73.9 229 27.1
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 3.2e-11 73.9 217 27.2
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 4.1e-11 73.6 344 25.6
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 5.4e-11 73.2 217 27.2
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 1.2e-10 72.0 219 27.4
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 1.6e-10 71.6 227 27.8
Ciclev10005313m.g Citrus clementina HOM05D006708 ORTHO05D008321 1.6e-10 71.6 224 26.3
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 2.1e-10 71.2 205 27.8
Cc03_g00080 Coffea canephora HOM05D006708 ORTHO05D008321 2.1e-10 71.2 346 23.4
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 2.1e-10 71.2 241 26.6
Cpa.g.sc146.18 Carica papaya HOM05D006708 ORTHO05D008321 2.7e-10 70.9 220 25.9
PGR031G3511 Punica granatum HOM05D006708 ORTHO05D008321 2.7e-10 70.9 219 26.9
Sabra08G0153200 Salix brachista HOM05D006708 ORTHO05D008321 2.7e-10 70.9 219 24.7
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 3.5e-10 70.5 219 25.6
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 4.6e-10 70.1 225 27.1
CiPaw.01G128700 Carya illinoinensis HOM05D006708 ORTHO05D008321 6.0e-10 69.7 220 26.4
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 6.0e-10 69.7 224 25.9
ClCG06G004170 Citrullus lanatus HOM05D006708 ORTHO05D008321 7.8e-10 69.3 199 27.1
Sc19g0002530 Simmondsia chinensis HOM05D006708 ORTHO05D008321 1.0e-09 68.9 218 26.1
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 3.0e-09 67.4 203 26.6
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 3.0e-09 67.4 203 26.6
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 3.0e-09 67.4 219 27.4
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 5.1e-09 66.6 221 27.6
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 6.6e-09 66.2 204 27.0
MD16G1135500 Malus domestica HOM05D006708 ORTHO05D008321 3.6e-07 60.5 219 26.0
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 2.4e-06 57.8 402 22.9
Cfa014219 Carpinus fangiana HOM05D006708 ORTHO05D008321 5.2e-06 56.6 112 29.5
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 5.2e-06 56.6 98 33.7
MELO3C021228.2 Cucumis melo HOM05D006708 ORTHO05D008321 6.8e-06 56.2 96 30.2
Sed0006346 Sechium edule HOM05D006708 ORTHO05D008321 8.9e-06 55.8 151 27.8


User provided reference genes

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