Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 2.3e-99 365.5 184 100.0
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 4.4e-58 228.4 212 62.7
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 2.2e-57 226.1 207 62.3
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.2e-57 226.1 203 62.1
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 6.4e-57 224.6 214 62.6
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.9e-56 223.0 205 62.0
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.2e-55 220.3 214 59.8
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 3.5e-55 218.8 204 61.8
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 4.6e-55 218.4 214 59.3
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 4.6e-55 218.4 257 51.8
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 6.0e-55 218.0 205 62.4
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 2.3e-54 216.1 215 58.1
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 2.3e-54 216.1 214 59.8
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 5.1e-54 214.9 205 61.5
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 5.1e-54 214.9 214 59.3
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 5.1e-54 214.9 214 59.3
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 6.6e-54 214.5 208 61.5
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 8.7e-54 214.2 214 58.4
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 8.7e-54 214.2 204 61.3
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 8.7e-54 214.2 214 57.5
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 1.5e-53 213.4 200 62.5
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 1.9e-53 213.0 204 60.3
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 4.3e-53 211.8 192 60.9
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 5.6e-53 211.5 185 64.3
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 7.3e-53 211.1 214 57.5
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.3e-52 210.3 215 56.7
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 1.6e-52 209.9 214 58.9
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 1.6e-52 209.9 204 60.3
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 2.1e-52 209.5 204 60.3
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 2.1e-52 209.5 204 60.3
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 2.8e-52 209.1 213 57.7
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 3.6e-52 208.8 204 59.3
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 6.2e-52 208.0 198 61.1
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 8.1e-52 207.6 200 60.5
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.4e-51 206.8 207 58.9
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 1.8e-51 206.5 212 56.6
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 2.4e-51 206.1 204 58.8
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 3.1e-51 205.7 212 56.1
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 3.1e-51 205.7 215 58.1
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 4.0e-51 205.3 206 58.7
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 6.9e-51 204.5 211 55.9
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.2e-50 203.8 202 59.4
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 1.5e-50 203.4 211 57.3
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 2.6e-50 202.6 212 55.7
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 5.8e-50 201.4 198 59.1
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 7.6e-50 201.1 212 55.7
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 7.6e-50 201.1 212 55.7
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 7.6e-50 201.1 212 55.7
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 7.6e-50 201.1 199 60.8
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 7.6e-50 201.1 201 58.7
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 1.3e-49 200.3 199 58.8
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.7e-49 199.9 199 58.8
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.7e-49 199.9 210 57.1
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.9e-49 199.1 223 54.7
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 3.8e-49 198.7 214 54.2
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 4.9e-49 198.4 208 55.3
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 8.4e-49 197.6 200 58.0
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 1.1e-48 197.2 209 57.4
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 1.1e-48 197.2 214 56.1
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 1.9e-48 196.4 203 57.1
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.4e-48 196.1 200 57.5
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 2.4e-48 196.1 211 54.5
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 5.4e-48 194.9 202 59.9
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 5.4e-48 194.9 201 57.2
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 9.3e-48 194.1 205 58.0
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 2.1e-47 193.0 217 54.4
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.5e-47 192.2 208 57.7
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.6e-47 191.8 208 57.2
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 4.6e-47 191.8 207 56.0
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.0e-47 191.4 207 56.5
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 6.0e-47 191.4 203 56.2
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 6.0e-47 191.4 203 56.2
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 6.0e-47 191.4 213 53.5
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 7.9e-47 191.0 208 56.2
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 7.9e-47 191.0 205 57.1
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 7.9e-47 191.0 213 54.9
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 7.9e-47 191.0 213 54.5
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.8e-46 189.9 202 56.4
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.3e-46 189.5 203 55.7
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 3.9e-46 188.7 207 55.6
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 3.9e-46 188.7 205 57.1
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 6.7e-46 188.0 206 55.8
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 6.7e-46 188.0 203 55.7
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 1.1e-45 187.2 199 56.3
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.1e-45 187.2 206 53.4
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.1e-45 187.2 199 56.3
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.5e-45 186.8 210 52.9
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.5e-45 186.8 278 45.7
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.5e-45 186.0 187 57.8
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 2.5e-45 186.0 198 55.1
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 3.3e-45 185.7 203 54.7
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 7.4e-45 184.5 196 54.6
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 9.6e-45 184.1 199 55.3
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.3e-44 183.7 200 55.0
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 3.7e-44 182.2 199 54.8
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 8.1e-44 181.0 205 54.6
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 2.4e-43 179.5 199 54.8
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 2.4e-43 179.5 197 53.8
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 4.0e-43 178.7 276 44.2
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 4.0e-43 178.7 210 51.4
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 4.0e-43 178.7 210 51.4
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 9.0e-43 177.6 189 56.1
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 2.0e-42 176.4 195 52.8
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 7.6e-42 174.5 210 50.5
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.0e-41 174.1 207 52.2
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 8.4e-41 171.0 196 53.1
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.4e-40 170.2 123 70.7
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.9e-40 169.9 302 41.4
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.5e-40 168.3 118 71.2
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.5e-40 168.3 118 71.2
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.6e-39 166.8 118 70.3
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 7.9e-39 164.5 176 56.2
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.9e-38 162.2 186 53.8
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 1.1e-37 160.6 195 52.3
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 1.5e-37 160.2 202 47.5
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.7e-37 158.3 126 68.3
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 5.7e-37 158.3 202 50.0
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.8e-35 153.3 178 51.7
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.3e-33 147.1 193 49.2
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 7.2e-32 141.4 87 81.6
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.1e-29 134.0 191 44.0
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 1.1e-27 127.5 130 56.9
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 7.7e-26 121.3 133 53.4
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 7.7e-26 121.3 234 41.0
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.0e-25 120.9 86 72.1
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.4e-24 117.1 226 36.7
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.2e-24 115.9 131 53.4
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.4e-19 100.5 209 38.3
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 8.5e-17 91.3 281 32.4
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 1.2e-15 87.4 210 32.4
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.3e-13 79.3 118 45.8
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 2.7e-07 59.7 106 39.6
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 3.0e-06 56.2 130 25.4


User provided reference genes

Program Settings