Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1937.2 965 100.0
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1739.9 966 90.9
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1731.5 960 90.2
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1719.1 962 89.4
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1719.1 962 89.4
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1660.2 965 86.0
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1620.9 964 83.7
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1620.5 961 84.1
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1613.2 966 83.6
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1612.0 966 83.5
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1611.3 946 85.0
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1608.2 965 83.2
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1607.0 963 82.2
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1604.7 958 84.2
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1604.0 958 83.8
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1602.0 966 82.9
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1601.3 962 83.0
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1599.7 966 83.5
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1595.9 970 83.2
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1594.3 953 82.9
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1594.3 944 83.4
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1593.9 956 83.2
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1592.0 967 82.8
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1587.0 956 82.7
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1586.6 963 83.0
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1586.6 959 82.6
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1585.9 956 82.6
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1585.1 961 82.9
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1583.9 964 82.5
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1582.4 958 82.5
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1582.0 965 81.5
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1579.7 961 80.6
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1579.3 965 81.7
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1579.3 970 81.3
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1579.3 958 82.0
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 965 80.5
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1573.9 944 83.5
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1573.9 960 82.0
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1572.0 956 82.0
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1571.2 963 80.7
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1569.3 963 80.3
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1568.5 963 80.6
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1568.1 967 81.2
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1568.1 961 80.6
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1563.9 966 80.7
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1563.5 971 80.8
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1560.4 969 80.6
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1560.4 968 80.3
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1560.4 944 82.0
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1560.0 969 80.3
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1558.5 965 81.1
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1556.2 965 79.9
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1548.9 977 79.3
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1548.5 975 79.6
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 963 80.1
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1546.2 964 80.4
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1544.6 976 79.7
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1543.9 965 78.9
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1540.0 1005 78.1
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1539.6 979 79.1
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1539.2 977 80.8
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1537.3 974 78.7
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1536.2 963 80.3
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1534.6 975 79.3
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1533.9 946 79.0
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1533.9 978 78.7
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1530.8 974 79.3
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1529.6 960 79.8
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 946 78.8
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1528.1 968 79.8
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1527.7 973 79.2
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1525.4 947 79.7
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1521.1 963 79.2
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1518.4 967 78.6
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1516.1 967 78.4
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1515.4 974 77.8
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1511.9 977 77.6
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1511.5 960 78.6
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1508.4 957 77.8
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1505.3 954 78.6
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1500.0 966 77.4
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1498.4 967 77.7
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1496.5 985 76.1
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1484.9 944 77.9
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1484.9 944 77.9
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1483.0 944 77.5
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1481.8 946 77.6
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1481.5 944 77.3
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1481.5 944 77.3
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 963 77.4
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 946 77.5
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1478.4 944 77.3
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1478.4 945 77.5
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1475.3 946 77.5
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1473.0 944 77.0
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1469.1 945 77.4
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1468.8 969 77.3
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 947 76.8
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1463.7 960 75.9
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1457.2 959 75.6
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1440.2 949 76.2
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1422.9 947 73.3
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1421.4 955 72.9
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1406.3 837 83.9
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1378.2 945 73.3
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1366.3 966 70.3
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1335.5 860 77.4
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1321.6 959 71.9
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1308.5 850 77.3
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1229.2 734 82.8
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1195.6 966 65.4
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1189.1 961 61.8
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1169.1 717 81.0
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1166.4 997 59.0
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1105.1 949 60.2
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1101.7 672 81.8
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1101.7 1022 55.8
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1089.7 630 85.4
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 1.0e-278 963.8 714 67.5
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 2.7e-223 779.6 751 53.4
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 3.2e-216 756.1 464 80.4
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.3e-188 662.1 450 73.1
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.2e-130 471.9 303 74.9
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 2.6e-117 427.6 1306 25.9
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 1.5e-112 411.8 644 39.3
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 1.4e-78 298.9 201 71.1
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 5.2e-73 280.4 210 70.0
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 8.3e-63 246.5 184 70.7
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 2.3e-52 211.8 300 43.7
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.0e-48 198.7 122 81.1
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 4.3e-43 181.0 132 70.5
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 8.3e-39 166.8 201 46.8
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 9.2e-38 163.3 139 61.9
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 6.0e-29 134.0 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 5.8e-16 90.9 80 61.2
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 9.0e-09 67.0 102 45.1
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 2.2e-07 62.4 45 68.9
Dinv05834 Davidia involucrata HOM05D005707 ORTHO05D181672 1.9e-06 59.3 131 36.6


User provided reference genes

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