Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.3e-208 729.6 381 100.0
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 1.3e-192 676.4 377 93.4
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 3.9e-181 638.3 377 86.7
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 4.6e-174 614.8 377 84.4
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 5.1e-173 611.3 377 82.8
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 8.1e-171 604.0 377 81.4
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 3.1e-170 602.1 377 81.2
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 4.4e-169 598.2 377 81.2
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 7.5e-169 597.4 379 83.1
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 1.9e-167 592.8 377 80.4
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 4.1e-167 591.7 379 81.8
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 3.5e-166 588.6 379 81.3
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 4.6e-166 588.2 377 81.2
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 6.0e-166 587.8 377 80.4
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 7.8e-166 587.4 377 80.6
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 1.0e-165 587.0 379 80.7
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 1.7e-165 586.3 377 80.9
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 3.0e-165 585.5 377 80.4
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 1.9e-164 582.8 377 79.0
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 1.9e-164 582.8 366 81.1
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 2.5e-164 582.4 377 79.0
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 4.3e-164 581.6 377 79.8
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 7.3e-164 580.9 379 80.7
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 9.5e-164 580.5 377 79.6
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 3.6e-163 578.6 379 80.5
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 6.2e-163 577.8 379 80.7
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 1.4e-162 576.6 377 79.8
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 2.4e-162 575.9 385 77.9
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 6.8e-162 574.3 377 75.9
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 3.4e-161 572.0 377 78.5
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 5.8e-161 571.2 377 78.2
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 6.4e-160 567.8 378 78.0
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 6.4e-160 567.8 377 77.5
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 8.4e-160 567.4 377 75.6
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 1.1e-159 567.0 379 78.6
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 2.4e-159 565.8 377 77.2
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 5.4e-159 564.7 377 78.8
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 1.2e-158 563.5 374 77.8
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 1.2e-158 563.5 379 78.1
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 2.1e-158 562.8 377 75.6
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 2.7e-158 562.4 377 75.9
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 3.5e-158 562.0 377 77.2
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 7.8e-158 560.8 377 77.7
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 7.8e-158 560.8 377 76.7
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 1.3e-157 560.1 377 76.4
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 2.3e-157 559.3 377 75.3
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 2.3e-157 559.3 377 76.7
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 3.0e-157 558.9 377 76.7
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 3.9e-157 558.5 377 78.0
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 8.7e-157 557.4 377 77.7
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.1e-156 557.0 378 75.9
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 1.1e-156 557.0 377 75.6
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 1.1e-156 557.0 350 81.7
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 1.1e-156 557.0 377 76.9
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 5.6e-156 554.7 377 76.9
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 1.6e-155 553.1 377 76.9
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 4.7e-155 551.6 375 76.3
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 4.7e-155 551.6 377 76.1
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 6.2e-155 551.2 377 75.3
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 1.8e-154 549.7 377 75.3
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 6.9e-154 547.7 375 76.5
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 9.0e-154 547.4 413 70.7
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 3.4e-153 545.4 357 78.4
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 1.3e-152 543.5 357 77.9
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 2.9e-152 542.3 377 75.1
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 1.4e-151 540.0 377 73.2
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 1.4e-151 540.0 398 72.1
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 4.2e-151 538.5 354 77.7
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 1.2e-150 537.0 374 75.1
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 2.1e-150 536.2 408 70.6
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 2.7e-150 535.8 377 72.7
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 3.5e-150 535.4 377 75.6
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 7.8e-150 534.3 336 81.2
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 1.7e-149 533.1 377 74.3
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 3.9e-149 531.9 377 72.7
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 8.7e-149 530.8 377 72.7
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 1.9e-148 529.6 327 83.8
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 1.9e-148 529.6 377 75.1
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 3.3e-148 528.9 377 74.3
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 4.8e-147 525.0 377 73.7
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 1.8e-146 523.1 327 82.6
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 1.8e-146 523.1 347 76.7
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 2.0e-145 519.6 377 72.4
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 1.3e-144 516.9 361 74.2
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 2.9e-144 515.8 373 72.9
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 8.4e-144 514.2 366 74.3
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 8.4e-144 514.2 366 74.3
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 1.9e-143 513.1 377 71.9
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 1.9e-143 513.1 377 71.9
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 2.4e-143 512.7 373 72.7
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 2.4e-143 512.7 373 72.7
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 2.1e-142 509.6 377 71.4
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 1.8e-141 506.5 357 73.7
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 1.8e-141 506.5 393 68.2
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 2.5e-140 502.7 377 70.8
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 1.3e-139 500.4 350 73.7
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 2.8e-139 499.2 377 69.8
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 6.2e-139 498.0 361 71.5
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 8.1e-139 497.7 377 70.6
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 2.0e-137 493.0 365 69.9
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 2.0e-137 493.0 395 67.3
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.1e-134 483.0 377 69.5
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 3.0e-133 479.2 353 70.0
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 7.4e-132 474.6 376 63.6
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 2.8e-131 472.6 377 69.0
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 2.6e-129 466.1 364 65.1
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 1.4e-127 460.3 377 68.2
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 1.4e-127 460.3 364 64.0
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 2.0e-113 413.3 313 70.9
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 9.4e-103 377.9 362 54.1
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 5.2e-85 318.9 218 74.8
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.4e-84 316.2 215 74.9
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.7e-83 313.9 215 74.4
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 4.9e-75 285.8 224 66.1
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 1.7e-56 224.2 405 35.8
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.1e-49 200.7 138 71.0
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.7e-46 189.5 145 64.8
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 8.1e-46 188.7 367 34.9
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 5.8e-44 182.6 145 62.1
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.3e-43 181.4 136 66.9
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 1.1e-37 161.8 120 64.2
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 2.2e-35 154.1 404 30.9
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 2.4e-29 134.0 119 68.9
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 3.9e-24 116.7 109 59.6
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 1.1e-21 108.6 72 72.2
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 9.0e-21 105.5 66 74.2
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 2.9e-19 100.5 83 57.8
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 1.6e-17 94.7 59 81.4
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.9e-15 87.8 55 72.7
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 7.4e-15 85.9 119 47.9
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 3.1e-13 80.5 55 65.5
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 9.0e-13 79.0 46 87.0
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 1.3e-11 75.1 55 60.0
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 5.5e-10 69.7 57 59.6
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 1.2e-09 68.6 60 56.7
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 1.2e-09 68.6 60 56.7
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla HOM05D003924 ORTHO05D228195 1.6e-09 68.2 53 64.2
Hma1.2p1_0786F.1_g217640 Hydrangea macrophylla HOM05D003924 ORTHO05D228318 1.0e-08 65.5 50 66.0


User provided reference genes

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