Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.8e-110 402.5 195 100.0
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 2.6e-93 345.5 202 85.6
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.7e-87 326.2 203 79.3
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.7e-87 325.1 203 78.8
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.8e-87 324.7 203 78.8
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 8.2e-87 323.9 203 78.8
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-86 323.2 203 78.8
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-86 323.2 203 78.3
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-86 323.2 203 78.3
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.9e-85 317.8 203 77.3
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 2.7e-82 308.9 194 78.4
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 2.3e-81 305.8 202 76.7
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 9.1e-78 293.9 201 72.6
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.8e-76 288.5 169 85.8
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 4.4e-72 275.0 190 71.1
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 4.4e-72 275.0 201 66.2
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 2.8e-71 272.3 198 68.2
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.1e-70 270.4 198 67.7
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.6e-69 266.5 204 66.7
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 7.8e-69 264.2 203 64.0
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.8e-68 261.9 203 64.0
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 5.0e-68 261.5 199 64.8
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.9e-67 259.6 200 61.5
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 2.5e-67 259.2 201 64.7
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 7.3e-67 257.7 199 63.8
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 7.3e-67 257.7 199 63.8
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 9.5e-67 257.3 199 64.3
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.2e-66 256.9 199 63.8
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.6e-66 256.5 199 63.8
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 2.8e-66 255.8 196 64.3
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 3.6e-66 255.4 201 63.7
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 4.7e-66 255.0 202 60.4
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 6.1e-66 254.6 202 61.4
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.0e-65 253.8 201 61.7
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 1.0e-65 253.8 203 65.5
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.8e-65 253.1 198 66.2
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 2.3e-65 252.7 215 59.5
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 4.0e-65 251.9 201 63.7
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 8.9e-65 250.8 203 63.1
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 8.9e-65 250.8 201 62.2
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.2e-64 250.4 199 62.8
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 2.0e-64 249.6 201 61.2
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 3.4e-64 248.8 198 62.1
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 3.4e-64 248.8 200 59.5
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 5.7e-64 248.1 199 63.3
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 7.5e-64 247.7 203 61.6
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 9.8e-64 247.3 201 61.2
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.3e-63 246.9 201 62.7
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.3e-63 246.9 199 59.8
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.3e-63 246.9 203 60.6
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 2.2e-63 246.1 196 62.8
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.9e-63 245.7 201 61.7
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 3.7e-63 245.4 202 62.4
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 4.9e-63 245.0 199 62.3
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 6.4e-63 244.6 203 61.1
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 8.3e-63 244.2 190 64.7
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.1e-62 243.8 199 61.8
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.4e-62 243.4 199 61.8
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.8e-62 243.0 199 63.3
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.8e-62 243.0 199 61.8
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.4e-62 242.7 197 61.9
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 3.2e-62 242.3 201 59.2
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 3.2e-62 242.3 196 62.2
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 4.1e-62 241.9 199 62.8
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.6e-61 240.0 196 62.2
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 2.0e-61 239.6 203 61.6
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 4.6e-61 238.4 198 60.1
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 5.9e-61 238.0 200 61.5
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 5.9e-61 238.0 203 62.1
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 5.9e-61 238.0 203 62.1
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 7.8e-61 237.7 201 57.2
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 7.8e-61 237.7 198 59.1
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.0e-60 237.3 199 61.3
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.3e-60 236.9 200 59.0
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.3e-60 236.1 201 57.7
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 2.3e-60 236.1 202 59.4
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 3.9e-60 235.3 203 58.6
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 3.9e-60 235.3 203 58.1
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 3.9e-60 235.3 202 61.4
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 5.0e-60 235.0 206 57.3
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.1e-59 233.8 202 57.4
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 1.1e-59 233.8 202 58.4
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.5e-59 232.6 204 59.3
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 2.5e-59 232.6 194 61.9
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 4.3e-59 231.9 201 58.2
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 5.6e-59 231.5 203 58.1
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 5.6e-59 231.5 203 57.6
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 5.6e-59 231.5 201 56.7
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 7.3e-59 231.1 201 57.2
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 9.5e-59 230.7 204 56.4
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.2e-58 230.3 202 56.9
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-58 229.9 205 58.0
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.6e-58 229.9 205 58.0
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 2.1e-58 229.6 205 58.0
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 2.1e-58 229.6 201 59.2
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 2.1e-58 229.6 197 58.9
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 2.1e-58 229.6 203 57.1
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.1e-58 229.6 203 59.1
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 4.7e-58 228.4 202 59.9
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.8e-57 226.5 202 58.4
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 3.1e-57 225.7 196 59.7
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 2.6e-56 222.6 206 56.3
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 3.4e-56 222.2 201 55.2
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 4.4e-56 221.9 197 56.9
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 5.8e-56 221.5 201 56.2
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 9.8e-56 220.7 206 55.8
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.7e-55 219.9 173 63.6
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 2.2e-55 219.5 192 62.5
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.9e-55 219.2 200 53.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 3.7e-55 218.8 204 57.4
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 3.7e-55 218.8 200 53.5
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 3.7e-55 218.8 200 53.5
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.5e-51 206.8 168 59.5
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.3e-51 205.3 203 50.2
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 9.5e-51 204.1 190 54.7
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.2e-50 203.8 190 53.2
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.7e-47 193.4 216 47.2
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.9e-46 189.9 201 50.7
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 8.6e-44 181.0 129 65.1
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.5e-43 180.3 183 51.4
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 2.5e-43 179.5 197 49.2
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 5.6e-43 178.3 197 49.2
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 2.6e-40 169.5 172 53.5
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 4.4e-40 168.7 193 47.2
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 3.3e-35 152.5 164 48.8
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 9.6e-35 151.0 126 56.3
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.2e-32 144.1 147 51.0
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.8e-31 139.0 188 45.2
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 4.9e-31 138.7 205 39.5
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 8.4e-31 137.9 222 40.1
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 3.0e-28 129.4 98 62.2
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 1.3e-26 124.0 130 48.5
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 6.2e-26 121.7 134 47.8
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 2.0e-24 116.7 82 64.6
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.0e-20 104.4 101 57.4
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 1.3e-20 104.0 123 43.1
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 3.3e-19 99.4 60 75.0
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 6.9e-17 91.7 112 42.9
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.9e-15 85.5 103 48.5
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 3.2e-14 82.8 113 45.1
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.6e-13 80.5 110 39.1
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.5e-11 73.9 90 50.0
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 2.4e-09 66.6 55 50.9


User provided reference genes

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