Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 6.1e-236 820.5 423 100.0
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 2.0e-218 762.3 394 99.7
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.2e-184 647.1 395 86.1
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.1e-183 646.0 395 85.8
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.6e-183 644.8 395 85.6
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.0e-182 643.7 395 85.3
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 8.6e-182 640.6 395 85.3
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.1e-180 636.0 395 84.6
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.1e-155 553.9 398 76.1
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.3e-153 547.0 397 75.3
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.3e-141 505.4 344 79.9
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.4e-141 504.6 334 80.8
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 2.0e-138 496.5 394 70.1
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.0e-134 482.6 402 65.7
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 2.6e-130 469.5 398 65.1
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 4.5e-130 468.8 401 66.3
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.9e-128 463.4 402 64.7
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 2.5e-128 463.0 398 64.1
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 7.2e-128 461.5 401 63.1
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 2.0e-125 453.4 395 64.1
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 2.0e-122 443.4 402 60.9
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 2.6e-122 443.0 402 63.9
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 3.8e-121 439.1 394 62.4
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 5.0e-121 438.7 396 62.4
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 6.5e-121 438.3 399 62.7
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 8.5e-121 438.0 410 62.2
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 9.4e-120 434.5 402 60.4
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 2.1e-119 433.3 398 61.1
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 1.8e-118 430.3 397 59.9
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.3e-118 429.9 399 61.7
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 5.2e-118 428.7 399 62.2
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.5e-117 427.2 399 61.4
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.6e-117 426.4 403 60.5
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 3.3e-117 426.0 399 61.7
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 8.2e-116 421.4 397 61.0
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.4e-115 420.6 395 60.0
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.8e-115 420.2 398 60.1
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 3.1e-115 419.5 412 56.8
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.1e-115 419.5 400 60.5
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 5.3e-115 418.7 397 61.5
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.2e-114 417.5 400 58.0
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.2e-114 417.5 399 60.2
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 2.0e-114 416.8 398 59.5
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 7.7e-114 414.8 399 59.6
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.0e-113 414.5 400 57.2
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 2.2e-113 413.3 401 57.9
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 2.9e-113 412.9 395 60.3
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.9e-113 412.9 397 58.9
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.1e-112 411.0 396 59.3
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 2.5e-112 409.8 407 60.0
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 2.5e-112 409.8 397 58.4
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.5e-112 409.8 404 57.7
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.6e-111 406.0 397 60.2
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.8e-110 403.7 401 59.6
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.8e-110 403.7 406 56.9
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 2.3e-110 403.3 407 58.5
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 3.0e-110 402.9 398 59.8
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.0e-110 402.9 395 59.7
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 6.7e-110 401.7 403 57.3
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 8.8e-110 401.4 401 58.4
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 2.0e-109 400.2 398 57.5
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 2.0e-109 400.2 403 58.8
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 2.0e-109 400.2 395 61.0
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 2.6e-109 399.8 398 56.3
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.3e-109 399.4 401 57.1
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 7.5e-109 398.3 396 58.8
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 9.7e-109 397.9 400 55.8
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 2.8e-108 396.4 397 57.4
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 1.1e-107 394.4 405 57.0
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 4.1e-107 392.5 395 58.0
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 9.1e-107 391.3 399 57.1
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.6e-106 390.6 395 57.0
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.0e-106 390.2 394 57.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.0e-106 390.2 394 57.4
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 2.7e-106 389.8 399 56.9
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 3.5e-106 389.4 398 58.0
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 7.7e-106 388.3 395 55.7
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.0e-105 387.9 398 57.8
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.0e-105 387.9 399 56.4
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.7e-105 387.1 403 55.6
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.8e-105 386.0 396 55.3
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 6.5e-105 385.2 397 55.4
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 6.5e-105 385.2 398 54.0
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.9e-104 383.6 398 57.3
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.9e-104 383.6 398 53.5
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.5e-104 383.3 397 57.9
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 2.5e-104 383.3 399 55.4
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 7.2e-104 381.7 395 56.7
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 3.6e-103 379.4 396 53.3
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 3.6e-103 379.4 407 54.5
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 3.6e-103 379.4 398 54.0
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 6.1e-103 378.6 400 54.8
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 6.1e-103 378.6 399 56.4
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 3.0e-102 376.3 398 53.8
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.2e-101 374.4 400 56.8
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 5.7e-101 372.1 400 56.0
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 9.8e-101 371.3 377 57.6
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 6.3e-100 368.6 411 55.2
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 1.6e-98 364.0 397 53.4
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 2.0e-98 363.6 396 53.8
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 4.5e-98 362.5 397 55.2
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 5.9e-98 362.1 397 53.1
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 5.9e-98 362.1 397 53.1
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.7e-97 360.5 399 55.4
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.5e-96 357.5 398 53.5
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 4.2e-96 355.9 396 53.3
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 5.5e-96 355.5 398 53.3
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 2.6e-93 346.7 396 52.0
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 3.7e-92 342.8 396 53.0
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 9.2e-91 338.2 396 52.3
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.1e-88 331.3 334 58.7
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.0e-85 320.5 408 47.1
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 9.2e-83 311.6 395 47.8
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.2e-82 311.2 401 49.1
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 7.0e-75 285.4 169 85.8
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.3e-73 281.2 433 42.7
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 3.3e-72 276.6 373 48.5
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 5.6e-72 275.8 395 45.3
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 1.2e-71 274.6 400 45.0
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 2.6e-69 266.9 393 42.5
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.7e-68 264.2 393 42.2
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.1e-64 251.5 388 43.3
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.4e-59 234.6 394 38.8
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 9.2e-59 231.9 396 41.2
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 6.2e-55 219.2 181 62.4
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.1e-54 218.4 348 41.1
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 3.1e-54 216.9 318 46.9
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 3.8e-52 209.9 432 38.0
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 3.2e-51 206.8 299 44.8
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 5.4e-51 206.1 460 35.9
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-50 204.5 303 43.9
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 7.3e-48 195.7 212 54.7
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 2.8e-47 193.7 140 66.4
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 3.6e-47 193.4 303 41.9
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 3.4e-45 186.8 315 44.1
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 4.8e-39 166.4 454 33.0
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 6.0e-34 149.4 258 44.2
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 1.1e-32 145.2 397 29.2
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 6.9e-30 136.0 153 54.2
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 3.9e-25 120.2 579 26.6
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 1.5e-21 108.2 60 80.0
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 2.2e-20 104.4 86 67.4
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 4.6e-18 96.7 90 56.7
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.8e-17 94.7 211 39.3
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 6.3e-15 86.3 56 66.1
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 2.0e-13 81.3 49 71.4
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 3.4e-13 80.5 395 24.8
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 3.8e-12 77.0 398 23.6
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 9.4e-11 72.4 80 43.8
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 3.9e-09 67.0 73 60.3


User provided reference genes

Program Settings