Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 0.0e+00 1093.2 548 100.0
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 2.1e-260 902.1 643 75.6
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.5e-250 868.6 633 74.2
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.6e-250 867.5 633 74.2
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.6e-249 864.8 633 73.9
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.1e-248 863.2 633 73.9
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.0e-247 859.0 613 75.0
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 9.3e-229 797.0 622 68.6
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 2.6e-223 778.9 628 68.3
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.2e-217 759.2 540 74.6
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.1e-197 693.7 604 62.1
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.8e-195 686.4 578 64.9
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 3.0e-195 685.6 633 60.0
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 4.0e-195 685.3 626 59.7
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 3.4e-194 682.2 625 59.5
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 8.3e-193 677.6 617 59.6
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 8.3e-193 677.6 603 60.7
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.1e-192 677.2 616 60.2
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.1e-192 677.2 631 59.9
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 4.1e-192 675.2 616 59.9
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 9.1e-192 674.1 629 59.1
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 2.7e-191 672.5 614 60.7
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.5e-189 666.0 641 58.2
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.5e-189 666.0 620 59.0
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 4.2e-189 665.2 620 58.9
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 4.2e-189 665.2 576 63.2
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 9.4e-189 664.1 636 59.0
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.2e-188 663.7 624 59.5
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.1e-188 662.9 632 58.2
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 4.0e-187 658.7 609 59.1
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 2.6e-186 656.0 624 57.7
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 8.3e-185 651.0 616 59.4
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 7.0e-184 647.9 604 59.3
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 4.5e-183 645.2 614 58.3
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 4.5e-183 645.2 602 59.8
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 4.5e-183 645.2 604 60.3
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 5.9e-183 644.8 636 59.1
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 2.3e-182 642.9 602 59.8
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 3.8e-182 642.1 605 59.3
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 5.0e-182 641.7 600 58.5
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 5.0e-182 641.7 614 59.3
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 8.6e-182 641.0 612 57.8
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 1.5e-181 640.2 618 57.8
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.5e-181 640.2 609 58.1
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 1.5e-181 640.2 632 56.6
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 2.5e-181 639.4 586 61.1
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 3.3e-181 639.0 626 56.7
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 7.2e-181 637.9 633 57.3
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 9.5e-181 637.5 614 58.1
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 2.1e-180 636.3 605 58.2
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 6.1e-180 634.8 632 56.3
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.8e-179 633.3 616 57.6
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 3.0e-179 632.5 610 57.0
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 4.0e-179 632.1 627 56.1
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 5.2e-179 631.7 640 56.7
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 5.2e-179 631.7 623 57.8
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.5e-178 630.2 606 57.1
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.5e-178 630.2 629 56.6
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 4.4e-178 628.6 630 56.3
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 5.7e-178 628.2 606 56.9
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.2e-177 626.3 625 57.0
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 8.3e-177 624.4 632 56.8
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 1.1e-176 624.0 632 55.4
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.8e-176 623.2 603 58.0
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.4e-176 622.9 599 57.4
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 2.4e-176 622.9 616 55.5
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.4e-176 622.9 605 56.5
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 4.1e-176 622.1 610 57.7
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 9.2e-176 620.9 584 59.8
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 9.2e-176 620.9 613 55.5
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 9.2e-176 620.9 583 58.3
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.2e-175 620.5 597 58.1
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.2e-175 620.5 630 54.6
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 2.0e-175 619.8 607 55.7
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 2.0e-175 619.8 637 54.9
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 5.9e-175 618.2 615 55.3
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 5.9e-175 618.2 598 56.5
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 7.8e-175 617.8 623 55.2
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 7.8e-175 617.8 626 56.1
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 2.9e-174 615.9 595 57.0
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 5.0e-174 615.1 597 56.4
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 5.0e-174 615.1 588 57.7
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.1e-173 614.0 629 56.1
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.5e-173 613.6 601 56.2
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.5e-173 613.6 601 56.2
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.9e-173 613.2 600 56.5
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 2.5e-173 612.8 575 58.3
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.2e-172 610.5 575 57.9
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.2e-172 610.5 575 57.9
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 8.0e-172 607.8 624 54.5
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 6.8e-171 604.7 596 57.2
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 8.9e-171 604.4 581 56.5
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 2.6e-170 602.8 578 57.3
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 9.8e-170 600.9 578 57.1
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.3e-169 600.5 583 56.4
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 2.2e-169 599.7 580 57.1
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 3.7e-169 599.0 598 55.2
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 6.4e-169 598.2 579 56.0
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 6.4e-169 598.2 595 55.5
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.6e-167 593.6 598 54.8
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 6.0e-167 591.7 637 52.3
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 9.5e-165 584.3 622 54.3
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 1.0e-158 564.3 577 53.6
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.3e-155 553.1 504 59.1
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.5e-146 523.9 631 49.0
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 5.8e-146 521.9 523 55.8
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.9e-144 516.9 555 52.3
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 2.7e-143 513.1 543 55.6
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 6.0e-143 511.9 557 52.4
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 6.0e-143 511.9 594 49.7
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 2.1e-140 503.4 565 51.9
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 4.8e-140 502.3 394 70.1
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 2.4e-136 490.0 577 48.2
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 2.8e-132 476.5 483 59.4
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 4.8e-132 475.7 661 44.2
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 1.9e-128 463.8 620 47.3
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.6e-127 459.1 488 51.8
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 6.9e-123 445.3 452 54.6
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.6e-116 424.1 458 54.4
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 2.8e-116 423.3 487 50.1
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 7.2e-112 408.7 474 52.5
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-110 404.4 374 62.6
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.7e-110 401.7 364 62.9
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 8.8e-102 375.2 395 54.4
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 5.0e-97 359.4 385 53.8
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 5.5e-96 355.9 646 38.5
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 8.2e-92 342.0 651 36.6
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 5.3e-91 339.3 245 69.0
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 1.9e-88 330.9 551 38.7
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 7.0e-83 312.4 412 44.9
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 3.8e-81 306.6 194 78.4
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 3.2e-80 303.5 262 61.5
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 2.4e-75 287.3 246 63.8
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 5.0e-73 279.6 530 37.5
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 1.5e-72 278.1 238 59.7
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 1.7e-57 228.0 147 71.4
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 6.6e-57 226.1 791 28.6
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 7.3e-56 222.6 328 41.5
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 1.6e-55 221.5 328 41.5
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 9.8e-53 212.2 325 40.6
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 1.2e-47 195.3 455 33.2
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 3.4e-45 187.2 496 31.5
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 8.1e-39 166.0 154 55.2
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 5.2e-38 163.3 366 36.6
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 1.9e-35 154.8 177 49.7
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 2.4e-35 154.5 528 27.5
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-31 141.7 218 41.7
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.8e-22 111.7 258 34.5
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 7.6e-21 106.3 98 55.1
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 7.1e-19 99.8 71 63.4
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 1.6e-18 98.6 58 74.1
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 7.9e-18 96.3 96 53.1
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 7.9e-10 69.7 40 77.5
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 8.7e-09 66.2 75 52.0


User provided reference genes

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