Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 4.2e-46 187.6 89 100.0
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 1.7e-26 122.5 60 93.3
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 7.7e-24 113.6 60 91.7
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 1.6e-21 105.9 64 75.0
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 8.0e-21 103.6 64 73.4
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 8.0e-21 103.6 64 73.4
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 8.0e-21 103.6 64 73.4
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 8.0e-21 103.6 64 73.4
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 9.8e-19 96.7 64 65.6
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 1.7e-18 95.9 64 64.1
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.2e-18 95.5 64 60.9
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.8e-18 95.1 64 60.9
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 2.8e-18 95.1 64 60.9
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 3.7e-18 94.7 62 66.1
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 3.7e-18 94.7 65 63.1
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 4.8e-18 94.4 61 65.6
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 4.8e-18 94.4 64 60.9
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 4.8e-18 94.4 61 65.6
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 6.3e-18 94.0 61 65.6
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 6.3e-18 94.0 63 63.5
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 6.3e-18 94.0 64 64.1
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 6.3e-18 94.0 53 73.6
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 6.3e-18 94.0 64 64.1
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 8.3e-18 93.6 64 64.1
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 8.3e-18 93.6 50 78.0
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-17 93.2 64 60.9
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 1.1e-17 93.2 61 67.2
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 1.1e-17 93.2 64 57.8
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.8e-17 92.4 61 65.6
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.8e-17 92.4 61 65.6
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 1.8e-17 92.4 61 63.9
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 1.8e-17 92.4 64 64.1
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 3.1e-17 91.7 60 65.0
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 3.1e-17 91.7 64 59.4
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 4.1e-17 91.3 61 62.3
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 5.4e-17 90.9 61 65.6
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 7.0e-17 90.5 60 61.7
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 7.0e-17 90.5 61 63.9
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.0e-17 90.5 61 63.9
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 9.1e-17 90.1 61 62.3
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 9.1e-17 90.1 61 62.3
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 9.1e-17 90.1 61 62.3
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 9.1e-17 90.1 61 60.7
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 9.1e-17 90.1 61 62.3
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 1.2e-16 89.7 64 57.8
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 1.2e-16 89.7 64 57.8
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.6e-16 89.4 51 74.5
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 2.0e-16 89.0 61 62.3
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.0e-16 89.0 61 62.3
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 2.0e-16 89.0 61 60.7
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 2.7e-16 88.6 61 62.3
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 3.5e-16 88.2 59 62.7
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 3.5e-16 88.2 48 75.0
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 4.5e-16 87.8 64 59.4
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 4.5e-16 87.8 51 74.5
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 4.5e-16 87.8 60 60.0
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 5.9e-16 87.4 50 70.0
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 5.9e-16 87.4 64 59.4
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 5.9e-16 87.4 50 72.0
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 5.9e-16 87.4 61 59.0
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 7.7e-16 87.0 50 68.0
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 1.0e-15 86.7 53 69.8
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 1.3e-15 86.3 59 61.0
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.3e-15 86.3 52 71.2
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.7e-15 85.9 54 66.7
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 1.7e-15 85.9 50 72.0
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 1.7e-15 85.9 50 70.0
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 2.3e-15 85.5 61 60.7
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 2.3e-15 85.5 61 54.1
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.9e-15 85.1 59 59.3
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 2.9e-15 85.1 58 60.3
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 2.9e-15 85.1 58 60.3
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 2.9e-15 85.1 50 68.0
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 3.8e-15 84.7 60 58.3
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 3.8e-15 84.7 50 72.0
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 6.6e-15 84.0 49 67.3
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 6.6e-15 84.0 49 67.3
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 6.6e-15 84.0 49 67.3
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 6.6e-15 84.0 49 67.3
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 6.6e-15 84.0 49 67.3
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 6.6e-15 84.0 49 67.3
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 6.6e-15 84.0 50 68.0
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 6.6e-15 84.0 48 70.8
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 6.6e-15 84.0 61 52.5
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 6.6e-15 84.0 61 52.5
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 8.6e-15 83.6 59 61.0
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 8.6e-15 83.6 50 64.0
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 8.6e-15 83.6 50 66.0
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 1.1e-14 83.2 58 62.1
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 1.9e-14 82.4 61 55.7
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 2.5e-14 82.0 50 64.0
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 5.5e-14 80.9 50 66.0
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 5.5e-14 80.9 59 54.2
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 5.5e-14 80.9 61 54.1
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 1.2e-13 79.7 49 67.3
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.6e-13 79.3 55 63.6
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 2.8e-13 78.6 59 57.6
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 3.6e-13 78.2 50 68.0
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 3.6e-13 78.2 61 52.5
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 3.6e-13 78.2 53 56.6
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 6.1e-13 77.4 48 68.8
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 6.1e-13 77.4 50 66.0
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 2.3e-12 75.5 50 64.0
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 3.0e-12 75.1 50 66.0
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 7.5e-11 70.5 47 59.6
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 4.9e-10 67.8 55 54.5
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 4.9e-10 67.8 55 54.5
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-09 66.6 55 54.5
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-06 56.6 72 44.4
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.5e-06 55.5 45 51.1
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.3e-06 54.7 40 47.5
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 7.3e-06 53.9 73 42.5


User provided reference genes

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