Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0275031 Rosa chinensis HOM05D003327 ORTHO05D004535 9.5e-130 467.6 403 100.0
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 1.5e-90 337.4 401 77.6
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 3.4e-87 326.2 297 97.0
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 1.3e-86 324.3 299 96.0
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.3e-86 324.3 299 96.0
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.7e-86 323.9 299 96.0
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 3.8e-86 322.8 298 95.6
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 6.7e-83 312.0 299 93.3
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 8.7e-83 311.6 299 93.3
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 2.6e-79 300.1 298 92.3
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 7.7e-79 298.5 314 61.8
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 1.0e-78 298.1 317 72.9
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 1.7e-78 297.4 298 91.9
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 2.9e-78 296.6 314 67.8
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 2.9e-78 296.6 314 74.5
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 2.9e-78 296.6 314 73.9
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 2.9e-78 296.6 307 64.8
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 3.8e-78 296.2 314 79.6
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 6.5e-78 295.4 298 89.3
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 1.9e-77 293.9 297 91.9
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 9.4e-77 291.6 314 62.7
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 1.2e-76 291.2 393 74.6
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 1.6e-76 290.8 315 76.2
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 1.6e-76 290.8 314 77.1
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 6.7e-75 285.4 291 92.1
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 6.7e-75 285.4 314 74.5
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 2.0e-74 283.9 398 80.7
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 1.3e-73 281.2 298 89.3
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 2.2e-73 280.4 404 71.8
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 4.8e-73 279.3 294 89.5
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 1.1e-72 278.1 388 74.5
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 1.4e-72 277.7 288 91.7
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 3.1e-72 276.6 298 87.6
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 3.1e-72 276.6 299 88.6
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 9.1e-72 275.0 284 92.3
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 9.1e-72 275.0 282 92.6
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 1.2e-71 274.6 298 87.6
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.5e-71 274.2 286 91.6
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 2.0e-71 273.9 287 92.0
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 3.4e-71 273.1 282 92.2
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 3.4e-71 273.1 391 63.9
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 4.5e-71 272.7 393 78.9
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 7.7e-71 271.9 288 90.3
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 1.0e-70 271.6 393 79.9
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.0e-70 271.6 282 91.8
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 1.3e-70 271.2 288 86.1
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.7e-70 270.8 387 52.2
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 2.9e-70 270.0 287 90.2
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 2.9e-70 270.0 392 65.8
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 2.9e-70 270.0 285 90.5
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 5.0e-70 269.2 282 91.5
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 8.5e-70 268.5 285 90.9
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 8.5e-70 268.5 286 91.3
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 8.5e-70 268.5 291 87.3
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.1e-69 268.1 282 91.5
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 1.4e-69 267.7 285 90.9
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.9e-69 267.3 288 88.9
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 2.5e-69 266.9 388 80.9
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 5.5e-69 265.8 298 86.2
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 7.2e-69 265.4 300 85.7
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 7.2e-69 265.4 300 85.7
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 9.4e-69 265.0 286 88.8
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 9.4e-69 265.0 287 76.7
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.2e-68 264.6 290 87.6
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 2.1e-68 263.8 286 89.5
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 3.6e-68 263.1 286 88.8
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 4.7e-68 262.7 298 85.2
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 2.3e-67 260.4 297 50.8
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 1.1e-66 258.1 290 88.3
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 2.6e-66 256.9 297 85.2
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.4e-66 256.1 297 84.8
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 7.4e-66 255.4 293 85.0
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 3.7e-65 253.1 291 85.2
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.8e-65 252.7 296 84.1
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 6.3e-65 252.3 287 86.4
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 8.2e-65 251.9 395 71.4
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 1.1e-64 251.5 291 84.2
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 4.1e-64 249.6 294 83.7
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 5.3e-64 249.2 290 84.8
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 9.1e-64 248.4 286 87.1
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 1.2e-63 248.1 300 71.7
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 1.6e-63 247.7 281 87.5
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 1.6e-63 247.7 294 84.0
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 2.0e-63 247.3 294 83.7
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 2.0e-63 247.3 294 83.7
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 2.6e-63 246.9 301 56.5
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 3.5e-63 246.5 281 87.2
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 4.5e-63 246.1 294 83.3
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 4.5e-63 246.1 294 83.3
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 4.5e-63 246.1 294 83.3
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 4.5e-63 246.1 291 82.8
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 5.9e-63 245.7 299 79.6
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 5.9e-63 245.7 281 86.5
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 1.3e-62 244.6 288 84.0
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 3.8e-62 243.0 284 86.3
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 3.8e-62 243.0 291 82.5
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 6.5e-62 242.3 292 83.6
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 1.9e-61 240.7 284 85.2
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 1.2e-60 238.0 133 86.5
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 1.6e-60 237.7 275 87.6
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 1.6e-60 237.7 132 87.1
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 2.1e-60 237.3 288 82.6
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 3.6e-60 236.5 283 85.2
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 8.0e-60 235.3 292 82.5
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 2.3e-59 233.8 133 84.2
Prupe.2G325100 Prunus persica HOM05D003327 ORTHO05D004535 1.5e-58 231.1 293 82.3
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 3.3e-58 229.9 275 86.5
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 5.7e-58 229.2 275 86.5
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 2.2e-57 227.3 399 59.1
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 3.7e-57 226.5 277 83.4
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 1.6e-55 221.1 280 82.9
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 2.0e-55 220.7 279 84.2
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 2.9e-54 216.9 132 77.3
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 3.8e-54 216.5 379 63.9
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 3.8e-54 216.5 379 63.9
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 1.5e-53 214.5 133 76.7
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 1.9e-53 214.2 394 56.3
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 2.5e-53 213.8 290 79.0
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 3.2e-53 213.4 123 82.1
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 3.6e-52 209.9 290 71.7
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 1.8e-51 207.6 279 77.8
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 4.4e-50 203.0 286 44.1
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 1.8e-48 197.6 278 80.9
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 1.8e-48 197.6 281 78.6
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 9.1e-48 195.3 274 79.6
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 1.2e-47 194.9 124 72.6
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 1.6e-47 194.5 127 75.6
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 4.5e-47 193.0 117 77.8
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 1.1e-45 188.3 367 65.7
Prupe.3G207300 Prunus persica HOM05D003327 ORTHO05D004535 4.2e-45 186.4 126 68.3
Thecc.05G055100 Theobroma cacao HOM05D003327 ORTHO05D004535 1.6e-44 184.5 103 86.4
TPR.G36382 Trifolium pratense HOM05D003327 ORTHO05D004535 4.0e-43 179.9 118 73.7
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 5.2e-43 179.5 126 68.3
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 2.0e-42 177.6 134 68.7
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 3.7e-41 173.3 390 47.9
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 8.3e-41 172.2 277 54.2
Nn2g15288 Nelumbo nucifera HOM05D003327 ORTHO05D004535 2.4e-40 170.6 103 78.6
A03p30430 Brassica napus HOM05D003327 ORTHO05D004535 3.1e-40 170.2 120 67.5
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 7.0e-40 169.1 124 62.9
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 9.2e-40 168.7 277 53.4
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 1.2e-39 168.3 278 52.5
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 2.3e-38 164.1 384 53.9
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 2.9e-38 163.7 275 53.5
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 1.5e-37 161.4 275 52.7
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 1.2e-36 158.3 130 64.6
BcaC01g06673 Brassica carinata HOM05D003327 ORTHO05D004535 2.0e-34 151.0 104 68.3
ECA238G3940 Erigeron canadensis HOM05D003327 ORTHO05D004535 5.8e-34 149.4 157 54.8
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 5.4e-32 142.9 124 52.4
BcaB01g02538 Brassica carinata HOM05D003327 ORTHO05D004535 5.6e-29 132.9 343 31.8
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 2.0e-26 124.4 278 71.2
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.6e-26 124.0 297 59.3
BcaB01g02535 Brassica carinata HOM05D003327 ORTHO05D024129 4.1e-24 116.7 74 77.0
Ciclev10027259m.g Citrus clementina HOM05D003327 ORTHO05D024129 1.3e-22 111.7 73 76.7
RcHm_v2.0_Chr3g0494641 Rosa chinensis HOM05D003327 ORTHO05D024129 1.3e-22 111.7 228 35.5
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 3.0e-22 110.5 61 90.2
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 3.9e-22 110.2 387 32.8
ClCG05G006860 Citrullus lanatus HOM05D000023 ORTHO05D000014 5.6e-21 106.3 108 55.6
Dinv12916 Davidia involucrata HOM05D003327 ORTHO05D004535 4.1e-16 90.1 50 82.0
Nn2g15287 Nelumbo nucifera HOM05D003327 ORTHO05D004535 2.1e-15 87.8 48 91.7
CsaV3_3G015510 Cucumis sativus L. HOM05D003327 ORTHO05D004535 1.6e-12 78.2 75 54.7
BcaC01g06672 Brassica carinata HOM05D003327 ORTHO05D004535 4.7e-12 76.6 47 83.0
Rhsim05G0039100 Rhododendron simsii HOM05D003327 ORTHO05D024129 1.6e-07 61.6 54 68.5
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 7.8e-07 59.3 32 90.6
Lalb_Chr24g0399861 Lupinus albus HOM05D003327 ORTHO05D004535 2.3e-06 57.8 113 69.0


User provided reference genes

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