Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0269311 Rosa chinensis HOM05D002810 ORTHO05D018492 2.4e-72 275.4 138 100.0
RcHm_v2.0_Chr4g0428851 Rosa chinensis HOM05D002810 ORTHO05D003983 9.4e-45 183.7 139 72.7
FAN17G0004 Fragaria x ananassa HOM05D002810 ORTHO05D003983 1.5e-42 176.4 146 66.4
FvH4_4g22610 Fragaria vesca HOM05D002810 ORTHO05D003983 4.4e-42 174.9 146 65.8
FAN12G2350 Fragaria x ananassa HOM05D002810 ORTHO05D003983 5.7e-42 174.5 146 65.8
FAN07G1588 Fragaria x ananassa HOM05D002810 ORTHO05D003983 9.8e-42 173.7 146 65.8
Prupe.1G214600 Prunus persica HOM05D002810 ORTHO05D003983 2.0e-39 166.0 146 61.6
MD13G1131000 Malus domestica HOM05D002810 ORTHO05D003983 1.3e-38 163.3 140 63.6
Gohir.A04G101600 Gossypium hirsutum HOM05D002810 ORTHO05D003983 8.5e-38 160.6 153 56.9
Haze_12505 Corylus avellana HOM05D002810 ORTHO05D003983 2.5e-37 159.1 153 57.5
QL08p055697 Quercus lobata HOM05D002810 ORTHO05D003983 3.2e-37 158.7 152 59.2
CsaV3_2G009270 Cucumis sativus L. HOM05D002810 ORTHO05D003983 7.2e-37 157.5 150 58.0
Cpa.g.sc182.1 Carica papaya HOM05D002810 ORTHO05D003983 1.6e-36 156.4 142 60.6
Cfa009452 Carpinus fangiana HOM05D002810 ORTHO05D003983 1.6e-36 156.4 153 56.9
MELO3C003905.2 Cucumis melo HOM05D002810 ORTHO05D003983 1.6e-36 156.4 146 58.9
ClCG11G011160 Citrullus lanatus HOM05D002810 ORTHO05D003983 4.7e-36 154.8 147 57.8
Dinv05540 Davidia involucrata HOM05D002810 ORTHO05D003983 6.1e-36 154.5 142 58.5
Gohir.D04G140800 Gossypium hirsutum HOM05D002810 ORTHO05D003983 8.0e-36 154.1 151 56.3
Gorai.012G125800 Gossypium raimondii HOM05D002810 ORTHO05D003983 8.0e-36 154.1 151 56.3
Sabra01G0047100 Salix brachista HOM05D002810 ORTHO05D003983 1.4e-35 153.3 141 59.6
Haze_21183 Corylus avellana HOM05D002810 ORTHO05D003983 1.8e-35 152.9 138 60.1
Manes.09G188200 Manihot esculenta HOM05D002810 ORTHO05D003983 1.8e-35 152.9 140 60.7
Hma1.2p1_0787F.1_g217990 Hydrangea macrophylla HOM05D002810 ORTHO05D003983 3.0e-35 152.1 141 58.9
Manes.08G101000 Manihot esculenta HOM05D002810 ORTHO05D003983 3.0e-35 152.1 142 59.9
Thecc.02G191900 Theobroma cacao HOM05D002810 ORTHO05D003983 4.0e-35 151.8 142 58.5
Potri.001G067800 Populus trichocarpa HOM05D002810 ORTHO05D003983 6.8e-35 151.0 141 59.6
Psat3g206520 Pisum sativum HOM05D002810 ORTHO05D003983 8.8e-35 150.6 138 56.5
Potri.003G162300 Populus trichocarpa HOM05D002810 ORTHO05D003983 1.2e-34 150.2 142 57.0
Cfa018257 Carpinus fangiana HOM05D002810 ORTHO05D003983 1.5e-34 149.8 138 59.4
COL.COLO4_19490 Corchorus olitorius HOM05D002810 ORTHO05D003983 1.5e-34 149.8 142 57.7
TAR371G0759 Trochodendron aralioides HOM05D002810 ORTHO05D003983 1.5e-34 149.8 152 56.6
COL.COLO4_24379 Corchorus olitorius HOM05D002810 ORTHO05D003983 2.0e-34 149.4 142 58.5
Nn3g16268 Nelumbo nucifera HOM05D002810 ORTHO05D003983 2.0e-34 149.4 143 55.2
Sabra03G0118000 Salix brachista HOM05D002810 ORTHO05D003983 2.0e-34 149.4 142 56.3
CANSAT11G0290 Cannabis sativa HOM05D002810 ORTHO05D003983 3.4e-34 148.7 140 56.4
Carub.0001s2811 Capsella rubella HOM05D002810 ORTHO05D003983 3.4e-34 148.7 139 57.6
ClCG01G020940 Citrullus lanatus HOM05D002810 ORTHO05D003983 3.4e-34 148.7 146 55.5
CARHR029560 Cardamine hirsuta HOM05D002810 ORTHO05D003983 4.4e-34 148.3 144 56.2
CiPaw.05G101000 Carya illinoinensis HOM05D002810 ORTHO05D003983 4.4e-34 148.3 138 59.4
AL1G43730 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 5.7e-34 147.9 138 58.0
Duzib248G0947 Durio zibethinus HOM05D002810 ORTHO05D003983 5.7e-34 147.9 149 55.0
BcaB03g13853 Brassica carinata HOM05D002810 ORTHO05D003983 9.8e-34 147.1 139 57.6
BcaC06g35470 Brassica carinata HOM05D002810 ORTHO05D003983 9.8e-34 147.1 139 57.6
C07p15700 Brassica napus HOM05D002810 ORTHO05D003983 9.8e-34 147.1 139 57.6
BolC7t42060H Brassica oleracea HOM05D002810 ORTHO05D003983 9.8e-34 147.1 139 57.6
MD16G1141200 Malus domestica HOM05D002810 ORTHO05D003983 9.8e-34 147.1 140 59.3
Sed0007290 Sechium edule HOM05D002810 ORTHO05D003983 9.8e-34 147.1 146 54.8
AT1G29880 Arabidopsis thaliana HOM05D002810 ORTHO05D003983 1.3e-33 146.7 139 56.8
BcaB07g32572 Brassica carinata HOM05D002810 ORTHO05D003983 1.3e-33 146.7 137 59.1
Sp1g25770 Schrenkiella parvula HOM05D002810 ORTHO05D003983 1.3e-33 146.7 139 58.3
Aa31LG1G22590 Aethionema arabicum HOM05D002810 ORTHO05D003983 1.7e-33 146.4 140 57.1
BcaC05g26999 Brassica carinata HOM05D002810 ORTHO05D003983 2.2e-33 146.0 139 56.8
C05p28620 Brassica napus HOM05D002810 ORTHO05D003983 2.2e-33 146.0 139 56.8
BolC5t31584H Brassica oleracea HOM05D002810 ORTHO05D003983 2.2e-33 146.0 139 56.8
TWI75G1068 Tripterygium wilfordii HOM05D002810 ORTHO05D003983 2.2e-33 146.0 141 55.3
A07p10180 Brassica napus HOM05D002810 ORTHO05D003983 2.8e-33 145.6 137 57.7
BraA07t28811Z Brassica rapa HOM05D002810 ORTHO05D003983 2.8e-33 145.6 137 57.7
Ciclev10004524m.g Citrus clementina HOM05D002810 ORTHO05D003983 3.7e-33 145.2 140 55.7
VMungo1383G1395 Vigna mungo HOM05D002810 ORTHO05D003983 4.9e-33 144.8 137 57.7
Atru.chr12.1423 Acer truncatum HOM05D002810 ORTHO05D003983 8.3e-33 144.1 142 55.6
A09p36620 Brassica napus HOM05D002810 ORTHO05D003983 1.1e-32 143.7 139 56.1
BraA09t39182Z Brassica rapa HOM05D002810 ORTHO05D003983 1.1e-32 143.7 139 56.1
Thhalv10006931m.g Eutrema salsugineum HOM05D002810 ORTHO05D003983 1.4e-32 143.3 139 56.8
Lsat_1_v5_gn_8_125820 Lactuca sativa HOM05D002810 ORTHO05D003983 1.8e-32 142.9 142 52.8
Nn4g22128 Nelumbo nucifera HOM05D002810 ORTHO05D003983 1.8e-32 142.9 140 54.3
Sed0005865 Sechium edule HOM05D002810 ORTHO05D003983 1.8e-32 142.9 151 52.3
TWI18G0448 Tripterygium wilfordii HOM05D002810 ORTHO05D003983 1.8e-32 142.9 142 54.9
Carub.0003s2844 Capsella rubella HOM05D002810 ORTHO05D003983 2.4e-32 142.5 139 54.7
Lalb_Chr04g0257351 Lupinus albus HOM05D002810 ORTHO05D003983 2.4e-32 142.5 137 59.1
Lalb_Chr17g0335731 Lupinus albus HOM05D002810 ORTHO05D003983 4.1e-32 141.7 146 53.4
Phvul.008G004200 Phaseolus vulgaris HOM05D002810 ORTHO05D003983 4.1e-32 141.7 138 55.1
Medtr7g406850 Medicago truncatula HOM05D002810 ORTHO05D003983 5.4e-32 141.4 137 54.0
PGR119G2030 Punica granatum HOM05D002810 ORTHO05D003983 9.1e-32 140.6 138 55.1
AL5G22970 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 1.2e-31 140.2 133 57.9
ECA233G3858 Erigeron canadensis HOM05D002810 ORTHO05D003983 1.2e-31 140.2 145 50.3
Solyc11g039830.2 Solanum lycopersicum HOM05D002810 ORTHO05D003983 1.2e-31 140.2 154 49.4
THA.LOC104807285 Tarenaya hassleriana HOM05D002810 ORTHO05D003983 1.2e-31 140.2 142 53.5
Ca_14018_v3 Cicer arietinum L. HOM05D002810 ORTHO05D003983 1.6e-31 139.8 148 52.7
Nitab4.5_0007955g0020 Nicotiana tabacum HOM05D002810 ORTHO05D003983 1.6e-31 139.8 150 49.3
Aqoxy1G00627 Aquilegia oxysepala HOM05D002810 ORTHO05D003983 2.7e-31 139.0 145 53.1
CAN.G849.7 Capsicum annuum HOM05D002810 ORTHO05D003983 2.7e-31 139.0 152 49.3
Glyma.08G363700 Glycine max HOM05D002810 ORTHO05D003983 2.7e-31 139.0 137 55.5
PGSC0003DMG400015909 Solanum tuberosum HOM05D002810 ORTHO05D003983 2.7e-31 139.0 140 52.9
arahy.Tifrunner.gnm1.ann1.MNGJ59 Arachis hypogaea HOM05D002810 ORTHO05D003983 3.5e-31 138.7 149 51.0
Nitab4.5_0000691g0260 Nicotiana tabacum HOM05D002810 ORTHO05D003983 3.5e-31 138.7 150 50.0
Sopen11g011720 Solanum pennellii HOM05D002810 ORTHO05D003983 3.5e-31 138.7 140 52.9
TPR.G9721 Trifolium pratense HOM05D002810 ORTHO05D003983 5.9e-31 137.9 126 57.1
HanXRQChr17g0553691 Helianthus annuus HOM05D002810 ORTHO05D003983 1.7e-30 136.3 137 51.8
Lj1g0018511 Lotus japonicus HOM05D002810 ORTHO05D003983 3.8e-30 135.2 135 54.1
Medtr3g006740 Medicago truncatula HOM05D002810 ORTHO05D003983 3.8e-30 135.2 139 51.8
PSO591G0171 Papaver somniferum HOM05D002810 ORTHO05D003983 5.0e-30 134.8 145 53.8
EL10Ac5g11280 Beta vulgaris HOM05D002810 ORTHO05D003983 3.3e-29 132.1 138 54.3
Eucgr.G01975 Eucalyptus grandis HOM05D002810 ORTHO05D003983 3.3e-29 132.1 138 52.2
SHI04113 Sapria himalayana HOM05D002810 ORTHO05D003983 3.3e-29 132.1 149 49.7
PSO832G1639 Papaver somniferum HOM05D002810 ORTHO05D003983 7.2e-29 131.0 148 52.0
GSVIVG01008654001 Vitis vinifera HOM05D002810 ORTHO05D003983 7.2e-29 131.0 137 53.3
Peaxi162Scf00842g00331 Petunia axillaris HOM05D002810 ORTHO05D003983 9.5e-29 130.6 136 55.1
Cc11_g14990 Coffea canephora HOM05D002810 ORTHO05D003983 2.8e-28 129.0 129 52.7
AUR62043309 Chenopodium quinoa HOM05D002810 ORTHO05D003983 4.7e-28 128.3 148 48.6
AUR62032217 Chenopodium quinoa HOM05D002810 ORTHO05D003983 3.0e-27 125.6 148 48.0
Sc22g0003310 Simmondsia chinensis HOM05D002810 ORTHO05D003983 3.0e-27 125.6 140 50.0
Glyma.18G070000 Glycine max HOM05D002810 ORTHO05D003983 1.5e-26 123.2 119 57.1
Cpa.g.sc13.179 Carica papaya HOM05D002810 ORTHO05D003983 1.1e-24 117.1 138 48.6
ATR0706G267 Amborella trichopoda HOM05D002810 ORTHO05D003983 3.2e-24 115.5 134 45.5
ATR0807G207 Amborella trichopoda HOM05D002810 ORTHO05D003983 5.9e-23 111.3 134 43.3
Ah.11g046940 Amaranthus hybridus HOM05D002810 ORTHO05D003983 7.8e-23 110.9 155 43.9
CDE08G1318 Ceratophyllum demersum HOM05D002810 ORTHO05D003983 2.3e-22 109.4 139 45.3
SEGI_39194 Sequoiadendron giganteum HOM05D002810 ORTHO05D003983 3.9e-22 108.6 134 48.5
Lsat_1_v5_gn_8_125780 Lactuca sativa HOM05D002810 ORTHO05D003983 2.5e-21 105.9 125 47.2
arahy.Tifrunner.gnm1.ann1.S5VT7G Arachis hypogaea HOM05D002810 ORTHO05D018492 9.5e-21 104.0 117 48.7
Os08g0538000 Oryza sativa ssp. japonica HOM05D002810 ORTHO05D003983 1.4e-19 100.1 142 43.7
Mapoly0003s0044 Marchantia polymorpha HOM05D002810 ORTHO05D003983 1.8e-19 99.8 133 42.1
HPP92_028069 Vanilla planifolia HOM05D002810 ORTHO05D003983 1.8e-19 99.8 102 53.9
TAR622G1073 Trochodendron aralioides HOM05D002810 ORTHO05D003983 2.3e-19 99.4 135 45.2
Hund10032 Selenicereus undatus HOM05D002810 ORTHO05D003983 3.1e-19 99.0 92 58.7
Hund02512 Selenicereus undatus HOM05D002810 ORTHO05D003983 7.5e-18 94.4 139 43.2
Actinidia36844 Actinidia chinensis HOM05D002810 ORTHO05D003983 1.7e-17 93.2 70 65.7
Medtr3g006730 Medicago truncatula HOM05D002810 ORTHO05D003983 1.7e-17 93.2 85 56.5
Thecc.03G141100 Theobroma cacao HOM05D002810 ORTHO05D003983 2.2e-17 92.8 73 63.0
GSVIVG01001092001 Vitis vinifera HOM05D002810 ORTHO05D003983 2.9e-17 92.4 71 63.4
Actinidia18296 Actinidia chinensis HOM05D002810 ORTHO05D003983 4.9e-17 91.7 69 65.2
CSS0035484 Camellia sinensis var. sinensis HOM05D002810 ORTHO05D003983 4.9e-17 91.7 69 65.2
CSS0036034 Camellia sinensis var. sinensis HOM05D002810 ORTHO05D003983 4.9e-17 91.7 69 65.2
CAN.G843.8 Capsicum annuum HOM05D002810 ORTHO05D003983 4.9e-17 91.7 69 65.2
Duzib068G0223 Durio zibethinus HOM05D002810 ORTHO05D003983 4.9e-17 91.7 73 60.3
Nitab4.5_0000976g0080 Nicotiana tabacum HOM05D002810 ORTHO05D003983 4.9e-17 91.7 69 65.2
Nitab4.5_0011600g0010 Nicotiana tabacum HOM05D002810 ORTHO05D003983 4.9e-17 91.7 69 65.2
Oeu054157.1 Olea europaea HOM05D002810 ORTHO05D003983 4.9e-17 91.7 69 65.2
Peaxi162Scf00314g00629 Petunia axillaris HOM05D002810 ORTHO05D003983 4.9e-17 91.7 69 65.2
vmacro19189 Vaccinium macrocarpon HOM05D002810 ORTHO05D003983 4.9e-17 91.7 69 65.2
COL.COLO4_37263 Corchorus olitorius HOM05D002810 ORTHO05D003983 6.4e-17 91.3 70 62.9
Dinv23230 Davidia involucrata HOM05D002810 ORTHO05D003983 6.4e-17 91.3 69 63.8
Hma1.2p1_0452F.1_g155970 Hydrangea macrophylla HOM05D002810 ORTHO05D003983 8.3e-17 90.9 76 59.2
CSS0026992 Camellia sinensis var. sinensis HOM05D002810 ORTHO05D003983 1.1e-16 90.5 69 63.8
Cc04_g05830 Coffea canephora HOM05D002810 ORTHO05D003983 1.1e-16 90.5 69 63.8
CBR_g24092 Chara braunii HOM05D002810 ORTHO05D003983 1.4e-16 90.1 147 41.5
Sopen03g037090 Solanum pennellii HOM05D002810 ORTHO05D003983 1.4e-16 90.1 69 63.8
PGSC0003DMG400014239 Solanum tuberosum HOM05D002810 ORTHO05D003983 1.4e-16 90.1 69 63.8
SGA_v2.0_scaffold37G14676 Striga asiatica HOM05D002810 ORTHO05D003983 1.9e-16 89.7 69 63.8
SGA_v2.0_scaffold5G02803 Striga asiatica HOM05D002810 ORTHO05D003983 1.9e-16 89.7 69 63.8
Oeu043187.1 Olea europaea HOM05D002810 ORTHO05D003983 2.4e-16 89.4 94 52.1
Rhsim08G0198100 Rhododendron simsii HOM05D002810 ORTHO05D003983 2.4e-16 89.4 68 64.7
SMO196G0036 Selaginella moellendorffii HOM05D002810 ORTHO05D003983 2.4e-16 89.4 112 41.1
Zm00001eb198180 Zea mays HOM05D002810 ORTHO05D003983 2.4e-16 89.4 138 40.6
PSO675G4694 Papaver somniferum HOM05D002810 ORTHO05D003983 3.2e-16 89.0 92 50.0
MSTRG.9374 Avicennia marina HOM05D002810 ORTHO05D003983 4.1e-16 88.6 93 49.5
PRCOL_00003040 Prasinoderma coloniale HOM05D002810 ORTHO05D003983 4.1e-16 88.6 137 38.0
Rhsim12G0181000 Rhododendron simsii HOM05D002810 ORTHO05D003983 4.1e-16 88.6 67 65.7
SGA_v2.0_scaffold168G38551 Striga asiatica HOM05D002810 ORTHO05D003983 5.4e-16 88.2 68 63.2
VMungo0540G0256 Vigna mungo HOM05D002810 ORTHO05D018492 7.0e-16 87.8 115 47.8
Migut.I00670 Erythranthe guttata HOM05D002810 ORTHO05D003983 9.2e-16 87.4 69 63.8
unitig_899.g14822 Utricularia gibba HOM05D002810 ORTHO05D003983 9.2e-16 87.4 85 52.9
Solyc03g118170.3 Solanum lycopersicum HOM05D002810 ORTHO05D003983 1.2e-15 87.0 69 62.3
Migut.D01180 Erythranthe guttata HOM05D002810 ORTHO05D003983 1.6e-15 86.7 70 60.0
SalBow1G2675 Salvia bowleyana HOM05D002810 ORTHO05D003983 1.6e-15 86.7 45 82.2
Zm00001eb084770 Zea mays HOM05D002810 ORTHO05D003983 1.6e-15 86.7 73 56.2
DCAR_013876 Daucus carota HOM05D002810 ORTHO05D003983 2.7e-15 85.9 69 59.4
unitig_736.g22830 Utricularia gibba HOM05D002810 ORTHO05D003983 3.5e-15 85.5 119 44.5
DCAR_025646 Daucus carota HOM05D002810 ORTHO05D003983 4.6e-15 85.1 69 60.9
HPP92_000359 Vanilla planifolia HOM05D002810 ORTHO05D003983 1.7e-14 83.2 40 87.5
arahy.Tifrunner.gnm1.ann1.KQJN8I Arachis hypogaea HOM05D002810 ORTHO05D003983 3.9e-14 82.0 45 77.8
Cre05.g233800 Chlamydomonas reinhardtii HOM05D002810 ORTHO05D003983 5.0e-14 81.6 125 40.0
ECA233G1476 Erigeron canadensis HOM05D002810 ORTHO05D003983 1.2e-12 77.0 75 50.7
SMO356G0375 Selaginella moellendorffii HOM05D002810 ORTHO05D003983 1.2e-12 77.0 45 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1180 Anthoceros agrestis HOM05D002810 ORTHO05D003983 2.8e-12 75.9 78 51.3
VMungo0251G2489 Vigna mungo HOM05D002810 ORTHO05D018492 2.8e-12 75.9 117 42.7
VMungo1309G0258 Vigna mungo HOM05D002810 ORTHO05D018492 1.1e-11 73.9 109 44.0
FvH4_4g22441 Fragaria vesca HOM05D002810 ORTHO05D003983 1.8e-11 73.2 45 64.4
FAN12G0467 Fragaria x ananassa HOM05D002810 ORTHO05D003983 1.8e-11 73.2 45 64.4
VMungo1309G0402 Vigna mungo HOM05D002810 ORTHO05D018492 4.0e-11 72.0 115 41.7
MD13G1145800 Malus domestica HOM05D002810 ORTHO05D003983 6.8e-11 71.2 115 40.0
Pp3c6_4010 Physcomitrium patens HOM05D002810 ORTHO05D003983 1.2e-10 70.5 76 44.7
AT1G29870 Arabidopsis thaliana HOM05D002810 ORTHO05D003983 7.5e-10 67.8 131 36.6
Ah.02g114570 Amaranthus hybridus HOM05D002810 ORTHO05D003983 3.7e-09 65.5 120 35.8
MSTRG.9373 Avicennia marina HOM05D002810 ORTHO05D003983 3.5e-07 58.9 31 77.4
Haze_26207 Corylus avellana HOM05D002810 ORTHO05D003983 6.0e-07 58.2 45 51.1
vmacro16759 Vaccinium macrocarpon HOM05D002810 ORTHO05D003983 1.0e-06 57.4 134 32.1
Cfa024575 Carpinus fangiana HOM05D002810 ORTHO05D003983 1.3e-06 57.0 39 53.8
Eucgr.G02153 Eucalyptus grandis HOM05D002810 ORTHO05D003983 2.3e-06 56.2 128 33.6
Actinidia25515 Actinidia chinensis HOM05D002810 ORTHO05D003983 3.0e-06 55.8 52 57.7
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 3.9e-06 55.5 75 49.3
Eucgr.H04980 Eucalyptus grandis HOM05D002810 ORTHO05D003983 6.6e-06 54.7 128 32.8


User provided reference genes

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