Gene: AT1G29880
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G29880
- Transcript Identifier AT1G29880.1
- Gene Type Coding gene
- Location Chr1 : 10459662-10462781 : negative
Gene Family Information
- ID HOM05D002810
- #Genes/#Species 247/99
- Phylogenetic origin
- ID ORTHO05D003983
- #Genes/#Species 196/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT1G29880.1
- uniprot O23627
Descriptions
- Description glycyl-tRNA synthetase / glycine-tRNA ligase
- Computational description glycyl-tRNA synthetase / glycine--tRNA ligase; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: response to cadmium ion, glycyl-tRNA aminoacylation; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), S15/NS1, RNA-binding (InterPro:IPR009068), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160), Anticodon-binding (InterPro:IPR004154), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: tRNA synthetase class II (G, H, P and S) family protein (TAIR:AT1G29870.1); Has 6392 Blast hits to 4464 proteins in 1181 species: Archae - 269; Bacteria - 3324; Metazoa - 242; Fungi - 171; Plants - 75; Viruses - 0; Other Eukaryotes - 2311 (source: NCBI BLink).
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Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006412 | IEA | GOA Database | translation | |
GO:0006418 | IEA | GOA Database | tRNA aminoacylation for protein translation | |
GO:0006418 | IEA | InterPro | tRNA aminoacylation for protein translation | |
GO:0006426 | IEA | GOA Database | glycyl-tRNA aminoacylation | |
GO:0006426 | IBA | Gene Ontology | glycyl-tRNA aminoacylation | 1 |
GO:0006426 | IEA | InterPro | glycyl-tRNA aminoacylation | |
GO:0015966 | ISS | Gene Ontology | diadenosine tetraphosphate biosynthetic process | |
GO:0070150 | IBA | Gene Ontology | mitochondrial glycyl-tRNA aminoacylation | 1 |
GO:0046686 | IEP | GOA Database | response to cadmium ion |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005524 | IEA | GOA Database | ATP binding | |
GO:0005524 | IEA | InterPro | ATP binding | |
GO:0016874 | IEA | GOA Database | ligase activity | |
GO:0000166 | IEA | GOA Database | nucleotide binding | |
GO:0000166 | IEA | InterPro | nucleotide binding | |
GO:0016740 | IEA | GOA Database | transferase activity | |
GO:0004812 | IEA | GOA Database | aminoacyl-tRNA ligase activity | |
GO:0004812 | IEA | InterPro | aminoacyl-tRNA ligase activity | |
GO:0004820 | IEA | GOA Database | glycine-tRNA ligase activity | |
GO:0004820 | ISS, IBA | Gene Ontology | glycine-tRNA ligase activity | 1 |
GO:0004820 | IEA | InterPro | glycine-tRNA ligase activity | |
GO:0046983 | ISS | Gene Ontology | protein dimerization activity |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005768 | IDA | GOA Database | endosome | |
GO:0005768 | HDA | Gene Ontology | endosome | 2 |
GO:0005829 | IDA IEA | GOA Database | cytosol | |
GO:0005802 | IDA | GOA Database | trans-Golgi network | |
GO:0005802 | HDA | Gene Ontology | trans-Golgi network | 2 |
GO:0005737 | IEA | GOA Database | cytoplasm | |
GO:0005737 | ISM, IBA | Gene Ontology | cytoplasm | 1 |
GO:0005737 | IEA | InterPro | cytoplasm | |
GO:0005794 | IDA | GOA Database | Golgi apparatus | |
GO:0005794 | HDA | Gene Ontology | Golgi apparatus | 2 |
GO:0005739 | IEA | GOA Database | mitochondrion | |
GO:0005739 | IDA IBA | Gene Ontology | mitochondrion | 1 3 |
GO:0009507 | HDA | Gene Ontology | chloroplast | 4 |
GO:0005634 | HDA | Gene Ontology | nucleus | 5 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR000738 | WHEP-TRS domain |
IPR004154 | Anticodon-binding |
IPR036621 | Anticodon-binding domain superfamily |
IPR002315 | Glycyl-tRNA synthetase |
IPR002314 | Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) |
IPR033731 | Glycyl-tRNA synthetase-like core domain |
IPR027031 | Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2 |
IPR009068 | S15/NS1, RNA-binding |
Mapman id | Description |
---|---|
17.2.9 | Protein biosynthesis.aminoacyl-tRNA synthetase activities.glycine-tRNA ligase |