Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0260331 Rosa chinensis HOM05D064872 ORTHO05D050714 9.1e-59 229.9 109 100.0
RcHm_v2.0_Chr6g0260041 Rosa chinensis HOM05D064872 ORTHO05D050714 3.7e-20 101.7 56 83.9
Cpa.g.sc46.94 Carica papaya HOM05D000399 ORTHO05D000304 2.4e-11 72.4 41 85.4
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 3.2e-11 72.0 36 91.7
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.2e-11 72.0 36 91.7
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.2e-11 72.0 36 91.7
FAN26G2901 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.2e-11 72.0 36 91.7
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.2e-11 72.0 36 91.7
ClCG06G012100 Citrullus lanatus HOM05D000399 ORTHO05D000304 4.1e-11 71.6 38 86.8
CSS0049878 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.4e-11 71.2 36 88.9
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 5.4e-11 71.2 36 88.9
Gohir.D05G051550 Gossypium hirsutum HOM05D000399 ORTHO05D000304 5.4e-11 71.2 36 88.9
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 5.4e-11 71.2 36 88.9
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 5.4e-11 71.2 36 88.9
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 9.2e-11 70.5 36 88.9
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 9.2e-11 70.5 49 71.4
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 9.2e-11 70.5 38 86.8
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 9.2e-11 70.5 36 88.9
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 9.2e-11 70.5 38 86.8
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 9.2e-11 70.5 36 88.9
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.2e-10 70.1 36 86.1
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.6e-10 69.7 49 67.3
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 2.0e-10 69.3 36 86.1
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 2.0e-10 69.3 36 88.9
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.0e-10 69.3 36 88.9
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.0e-10 69.3 36 88.9
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 2.0e-10 69.3 36 86.1
Manes.14G140128 Manihot esculenta HOM05D000399 ORTHO05D000304 2.0e-10 69.3 36 88.9
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 2.7e-10 68.9 36 86.1
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 2.7e-10 68.9 36 86.1
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 2.7e-10 68.9 36 88.9
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 2.7e-10 68.9 36 88.9
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 2.7e-10 68.9 36 83.3
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 2.7e-10 68.9 36 86.1
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 3.5e-10 68.6 36 80.6
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 3.5e-10 68.6 46 69.6
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 3.5e-10 68.6 36 83.3
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 4.6e-10 68.2 36 83.3
CDE08G1354 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 4.6e-10 68.2 36 86.1
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 4.6e-10 68.2 36 86.1
TAR626G0573 Trochodendron aralioides HOM05D000399 ORTHO05D000304 4.6e-10 68.2 36 86.1
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 4.6e-10 68.2 36 86.1
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 6.0e-10 67.8 35 91.4
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 6.0e-10 67.8 35 91.4
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 6.0e-10 67.8 36 83.3
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 6.0e-10 67.8 35 88.6
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 6.0e-10 67.8 36 86.1
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 6.0e-10 67.8 36 80.6
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 7.8e-10 67.4 36 77.8
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 7.8e-10 67.4 36 83.3
QL02p091725 Quercus lobata HOM05D000399 ORTHO05D000304 7.8e-10 67.4 36 86.1
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 1.0e-09 67.0 36 80.6
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 1.0e-09 67.0 36 80.6
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 1.0e-09 67.0 36 80.6
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 1.0e-09 67.0 36 80.6
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 1.0e-09 67.0 36 80.6
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 1.0e-09 67.0 49 67.3
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 1.0e-09 67.0 36 80.6
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.0e-09 67.0 36 83.3
HPP92_005313 Vanilla planifolia HOM05D000399 ORTHO05D000304 1.0e-09 67.0 36 77.8
HPP92_005339 Vanilla planifolia HOM05D000399 ORTHO05D000304 1.0e-09 67.0 36 77.8
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 1.3e-09 66.6 36 83.3
Ca_21628_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 1.3e-09 66.6 36 83.3
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.3e-09 66.6 36 77.8
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 1.3e-09 66.6 36 77.8
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.7e-09 66.2 36 80.6
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 1.7e-09 66.2 36 83.3
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 1.7e-09 66.2 36 83.3
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 1.7e-09 66.2 49 67.3
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 1.7e-09 66.2 36 86.1
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 1.7e-09 66.2 36 75.0
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 1.7e-09 66.2 36 80.6
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.3e-09 65.9 35 80.0
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 2.3e-09 65.9 36 80.6
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 2.3e-09 65.9 36 83.3
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 2.3e-09 65.9 36 83.3
Lj7P451T20 Lonicera japonica HOM05D000399 ORTHO05D000304 3.0e-09 65.5 35 85.7
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 3.9e-09 65.1 36 83.3
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 3.9e-09 65.1 36 80.6
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 5.0e-09 64.7 36 77.8
MBI15_g29767_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 5.0e-09 64.7 36 83.3
Haze_19296 Corylus avellana HOM05D000399 ORTHO05D000304 6.6e-09 64.3 36 86.1
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 6.6e-09 64.3 38 81.6
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 8.6e-09 63.9 36 80.6
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 8.6e-09 63.9 36 86.1
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 8.6e-09 63.9 36 77.8
unitig_46.g18388 Utricularia gibba HOM05D000399 ORTHO05D000304 1.1e-08 63.5 36 75.0
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.9e-08 62.8 36 75.0
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.9e-08 62.8 32 90.6
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 2.5e-08 62.4 36 77.8
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 2.5e-08 62.4 36 69.4
SEGI_23254 Sequoiadendron giganteum HOM05D000399 ORTHO05D000304 2.1e-07 59.3 39 74.4
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 2.8e-07 58.9 32 78.1
QL10p051120 Quercus lobata HOM05D000005 ORTHO05D000012 2.8e-07 58.9 41 68.3
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 1.4e-06 56.6 39 66.7
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 1.4e-06 56.6 36 69.4
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 1.4e-06 56.6 36 69.4
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 1.8e-06 56.2 36 69.4
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 5.2e-06 54.7 34 73.5
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 6.8e-06 54.3 34 73.5


User provided reference genes

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