Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1305.8 667 100.0
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1285.4 667 98.1
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 0.0e+00 1266.1 677 96.0
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1150.2 681 85.8
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1118.6 666 84.4
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 661 85.2
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1110.1 662 84.0
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1110.1 662 84.0
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1109.4 661 83.7
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1107.8 666 83.8
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1107.8 662 84.0
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1106.7 661 84.1
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1102.8 662 83.4
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1100.9 663 83.3
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1098.6 662 83.2
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1098.2 662 82.8
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1097.4 662 83.2
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1096.6 662 83.2
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1095.9 665 82.7
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1095.9 661 83.7
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1095.1 660 82.9
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 662 82.5
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 663 83.4
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1092.0 664 82.8
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1092.0 661 82.9
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1090.1 664 83.1
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1088.9 664 81.0
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1087.0 662 83.2
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1083.9 677 81.8
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1082.0 662 82.5
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1081.6 663 82.1
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 4.6e-312 1074.7 662 82.0
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 4.6e-312 1074.3 663 81.6
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 4.6e-312 1073.5 661 82.5
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 2.3e-311 1071.6 662 81.6
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 3.2e-311 1071.2 664 81.5
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 4.1e-311 1070.8 661 81.8
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 9.1e-311 1069.7 664 81.2
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 1.2e-310 1069.3 690 78.7
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 2.6e-310 1068.1 659 82.2
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 2.6e-310 1068.1 664 81.0
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 3.5e-310 1067.8 664 81.0
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 4.5e-310 1067.4 662 81.1
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 5.9e-310 1067.0 661 81.2
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 5.9e-310 1067.0 665 81.5
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 5.0e-309 1063.9 648 82.4
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 5.0e-309 1063.9 648 82.4
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 8.5e-309 1063.1 661 80.3
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 8.0e-307 1056.6 664 80.1
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 3.0e-306 1054.7 655 81.7
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.9e-306 1054.3 704 80.4
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 3.9e-306 1054.3 661 80.6
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.1e-305 1052.7 645 81.9
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 1.5e-305 1052.4 660 80.6
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 5.7e-305 1050.4 685 78.7
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 7.4e-305 1050.0 670 78.4
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 1.3e-304 1049.3 664 78.9
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 2.2e-304 1048.5 664 78.8
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.7e-304 1047.7 638 87.1
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 3.1e-303 1044.6 702 76.4
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 2.0e-302 1042.0 664 78.0
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 2.6e-302 1041.6 663 78.7
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.0e-301 1039.6 704 79.5
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 1.3e-301 1039.3 661 78.1
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 2.2e-301 1038.5 661 77.9
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 2.2e-301 1038.5 663 77.5
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 6.5e-301 1036.9 663 78.0
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 8.5e-301 1036.6 661 78.1
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 3.2e-300 1034.6 664 77.6
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 4.2e-300 1034.2 664 77.6
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 7.2e-300 1033.5 665 78.5
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 5.2e-298 1027.3 687 77.1
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 2.0e-297 1025.4 674 76.4
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 1.8e-295 1018.8 682 75.5
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.2e-293 1011.9 674 77.6
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 2.9e-293 1011.5 660 77.0
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 8.5e-293 1010.0 692 74.0
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 1.1e-292 1009.6 642 78.3
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 7.2e-292 1006.9 647 77.3
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 2.6e-289 998.4 713 72.4
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 8.3e-288 993.4 746 70.6
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 3.4e-281 971.5 685 73.7
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 9.8e-281 969.9 662 75.4
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 5.0e-277 957.6 646 75.4
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 2.3e-274 948.7 580 81.7
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.1e-271 939.9 662 73.9
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 2.0e-265 919.1 666 69.4
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 3.4e-265 918.3 596 78.9
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 1.4e-263 912.9 645 69.6
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 6.6e-261 904.0 675 70.1
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 5.6e-260 901.0 590 75.9
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 3.6e-259 898.3 654 72.6
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 8.9e-258 893.6 665 67.7
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.2e-257 893.3 655 68.7
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 6.0e-254 880.9 509 83.9
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 3.0e-253 878.6 662 66.2
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 5.2e-250 867.8 661 69.4
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.7e-232 809.7 443 89.6
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 6.1e-206 721.5 463 75.4
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.5e-196 690.3 686 53.5
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 6.5e-176 621.7 382 78.3
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 1.9e-175 620.2 365 86.6
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-174 617.5 542 60.9
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 3.4e-172 609.4 675 51.6
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 2.8e-171 606.3 358 84.9
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 6.3e-171 605.1 679 49.8
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 3.6e-166 589.3 357 82.6
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.3e-163 580.9 378 78.3
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 3.4e-140 503.1 367 70.8
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 9.2e-138 495.0 305 80.0
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.9e-135 487.3 601 49.9
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.0e-128 464.9 305 75.1
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.3e-128 464.5 307 75.2
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 7.1e-114 415.6 297 72.1
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 4.5e-108 396.4 467 50.3
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 2.7e-73 280.8 214 65.9
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.5e-71 275.0 216 63.9
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 3.2e-58 230.7 174 69.0
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 6.8e-56 223.0 234 55.6
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 2.7e-52 211.1 246 51.6
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 8.6e-51 206.1 104 87.5
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 3.6e-49 200.7 219 54.3
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 4.7e-49 200.3 185 54.6
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 1.0e-35 156.0 154 54.5
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 6.6e-35 153.3 87 85.1
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 8.6e-35 152.9 87 85.1
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 1.9e-34 151.8 408 32.1
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 4.3e-34 150.6 466 33.3
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 7.3e-34 149.8 87 83.9
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 1.5e-31 142.1 86 84.9
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 7.5e-31 139.8 98 70.4
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.7e-27 128.6 86 76.7
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.1e-24 119.4 113 55.8
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 5.1e-19 100.5 54 88.9
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 1.1e-18 99.4 68 75.0
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 1.1e-18 99.4 68 75.0
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-18 99.4 55 87.3
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 1.5e-18 99.0 82 65.9
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.4e-15 87.8 82 61.0
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 2.9e-14 84.7 96 51.0
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 3.8e-14 84.3 49 83.7
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 4.9e-14 84.0 201 34.3
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 8.4e-14 83.2 49 83.7
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 4.2e-13 80.9 63 69.8
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 1.2e-12 79.3 87 52.9
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.3e-11 75.9 94 44.7
RcHm_v2.0_Chr3g0472751 Rosa chinensis HOM05D004763 ORTHO05D344474 6.6e-11 73.6 41 92.7
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.3e-10 70.1 37 86.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 8.1e-09 66.6 105 41.0
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 5.3e-08 63.9 44 65.9
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 9.9e-07 59.7 69 53.6
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.7e-06 58.9 44 65.9
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 6.4e-06 57.0 40 65.0
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 8.4e-06 56.6 43 67.4


User provided reference genes

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