Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 6.1e-58 227.3 113 100.0
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 3.0e-20 102.1 82 68.3
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 1.5e-19 99.8 87 62.1
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.5e-19 99.8 87 62.1
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.5e-19 99.8 87 62.1
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.5e-19 99.8 87 62.1
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.3e-19 98.6 87 60.9
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.6e-18 96.3 82 61.0
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.6e-18 96.3 82 61.0
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 1.6e-18 96.3 82 61.0
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 2.8e-18 95.5 87 57.5
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 3.6e-18 95.1 82 59.8
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 3.6e-18 95.1 82 59.8
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 3.6e-18 95.1 82 59.8
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 4.7e-18 94.7 82 61.0
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 4.7e-18 94.7 82 59.8
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 6.2e-18 94.4 82 59.8
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 6.2e-18 94.4 82 59.8
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 6.2e-18 94.4 82 59.8
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 8.0e-18 94.0 82 59.8
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 8.0e-18 94.0 82 58.5
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 8.0e-18 94.0 82 58.5
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 8.0e-18 94.0 82 59.8
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 8.0e-18 94.0 82 59.8
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 1.1e-17 93.6 82 59.8
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.1e-17 93.6 82 58.5
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 1.4e-17 93.2 87 55.2
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 1.8e-17 92.8 82 58.5
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 1.8e-17 92.8 82 58.5
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 1.8e-17 92.8 82 57.3
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 2.3e-17 92.4 81 61.7
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 2.3e-17 92.4 82 58.5
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 3.1e-17 92.0 82 58.5
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 3.1e-17 92.0 82 57.3
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 3.1e-17 92.0 82 58.5
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 3.1e-17 92.0 82 58.5
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 4.0e-17 91.7 87 52.9
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 4.0e-17 91.7 82 56.1
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 4.0e-17 91.7 82 57.3
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 4.0e-17 91.7 82 57.3
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 4.0e-17 91.7 82 57.3
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 5.2e-17 91.3 82 56.1
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 5.2e-17 91.3 82 56.1
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 5.2e-17 91.3 82 56.1
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 5.2e-17 91.3 82 56.1
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 5.2e-17 91.3 82 56.1
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 5.2e-17 91.3 82 56.1
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 6.8e-17 90.9 82 58.5
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 6.8e-17 90.9 82 58.5
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.8e-17 90.9 82 56.1
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.8e-17 90.9 82 56.1
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 8.9e-17 90.5 82 56.1
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 8.9e-17 90.5 82 56.1
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 8.9e-17 90.5 82 56.1
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 8.9e-17 90.5 82 56.1
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 1.2e-16 90.1 82 57.3
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 1.5e-16 89.7 82 56.1
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 1.5e-16 89.7 82 54.9
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 1.5e-16 89.7 82 54.9
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 1.5e-16 89.7 82 54.9
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.5e-16 89.7 82 57.3
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.5e-16 89.7 82 57.3
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 1.5e-16 89.7 82 57.3
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 1.5e-16 89.7 82 54.9
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 1.5e-16 89.7 82 58.5
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 1.5e-16 89.7 82 56.1
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 2.0e-16 89.4 82 56.1
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 2.0e-16 89.4 87 54.0
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 2.6e-16 89.0 82 57.3
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 2.6e-16 89.0 81 58.0
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 2.6e-16 89.0 82 56.1
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 2.6e-16 89.0 82 57.3
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 2.6e-16 89.0 82 56.1
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 2.6e-16 89.0 82 52.4
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 2.6e-16 89.0 82 57.3
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 2.6e-16 89.0 87 51.7
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 3.4e-16 88.6 82 53.7
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 3.4e-16 88.6 82 56.1
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 3.4e-16 88.6 82 56.1
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 3.4e-16 88.6 87 52.9
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 4.4e-16 88.2 82 56.1
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 4.4e-16 88.2 82 56.1
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 5.8e-16 87.8 82 52.4
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 5.8e-16 87.8 81 55.6
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 5.8e-16 87.8 82 56.1
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 5.8e-16 87.8 82 53.7
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 7.5e-16 87.4 82 53.7
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 7.5e-16 87.4 81 54.3
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 7.5e-16 87.4 87 55.2
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 7.5e-16 87.4 82 53.7
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 9.8e-16 87.0 82 56.1
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.3e-15 86.7 82 54.9
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.3e-15 86.7 82 54.9
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 1.3e-15 86.7 82 54.9
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 1.7e-15 86.3 82 54.9
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 1.7e-15 86.3 82 54.9
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 2.2e-15 85.9 80 56.2
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 2.2e-15 85.9 82 52.4
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 2.2e-15 85.9 82 54.9
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 2.9e-15 85.5 82 54.9
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 2.9e-15 85.5 82 53.7
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 2.9e-15 85.5 82 54.9
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 2.9e-15 85.5 82 54.9
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 6.4e-15 84.3 81 53.1
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 8.3e-15 84.0 81 54.3
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 8.3e-15 84.0 81 54.3
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 8.3e-15 84.0 81 55.6
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 1.1e-14 83.6 82 52.4
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 1.9e-14 82.8 82 53.7
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 5.4e-14 81.3 81 53.1
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 7.0e-14 80.9 83 53.0
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 9.2e-14 80.5 82 50.0
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 2.0e-13 79.3 83 49.4
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 2.0e-13 79.3 83 49.4
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.7e-13 79.0 82 50.0
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 6.0e-13 77.8 82 50.0
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.0e-12 77.0 82 50.0
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 1.3e-12 76.6 81 50.6
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 1.7e-12 76.3 84 50.0
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 3.9e-12 75.1 84 46.4
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 1.1e-11 73.6 81 50.6
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 1.5e-11 73.2 81 49.4
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 1.9e-11 72.8 79 48.1
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 4.3e-11 71.6 79 45.6
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 5.6e-11 71.2 79 45.6
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 9.5e-11 70.5 82 45.1
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 1.2e-08 63.5 82 41.5
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 2.0e-08 62.8 64 54.7
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 2.6e-08 62.4 81 40.7
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 7.5e-08 60.8 74 47.3
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 7.5e-08 60.8 74 47.3
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 7.5e-08 60.8 74 47.3
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 9.9e-08 60.5 68 48.5
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 3.7e-07 58.5 42 64.3
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.4e-07 57.8 83 37.3


User provided reference genes

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