Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 3.3e-59 231.5 116 100.0
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 1.8e-28 129.4 114 57.9
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 2.3e-28 129.0 107 61.7
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 3.0e-28 128.6 107 61.7
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 6.7e-28 127.5 107 60.7
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 6.7e-28 127.5 107 60.7
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 6.7e-28 127.5 107 60.7
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 6.7e-28 127.5 107 61.7
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 8.8e-28 127.1 107 60.7
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 8.8e-28 127.1 107 59.8
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 1.1e-27 126.7 107 59.8
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 1.1e-27 126.7 107 59.8
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 2.6e-27 125.6 107 59.8
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 2.6e-27 125.6 107 59.8
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 2.6e-27 125.6 107 59.8
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 2.6e-27 125.6 107 59.8
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 3.3e-27 125.2 107 58.9
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 4.4e-27 124.8 107 59.8
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 4.4e-27 124.8 107 58.9
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 5.7e-27 124.4 107 59.8
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 5.7e-27 124.4 107 59.8
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 9.7e-27 123.6 107 59.8
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 1.3e-26 123.2 107 58.9
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 1.3e-26 123.2 107 58.9
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 1.7e-26 122.9 107 58.9
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 1.7e-26 122.9 107 57.9
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 2.2e-26 122.5 107 57.9
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 2.2e-26 122.5 107 58.9
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 2.2e-26 122.5 107 58.9
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 2.2e-26 122.5 102 57.8
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 2.2e-26 122.5 107 58.9
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 2.2e-26 122.5 107 57.9
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 2.8e-26 122.1 107 58.9
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 2.8e-26 122.1 107 57.9
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 2.8e-26 122.1 107 57.9
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 3.7e-26 121.7 107 57.9
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 3.7e-26 121.7 107 57.9
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 3.7e-26 121.7 107 57.9
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 3.7e-26 121.7 107 57.9
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 3.7e-26 121.7 107 58.9
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 3.7e-26 121.7 107 57.9
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 3.7e-26 121.7 107 57.9
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 4.8e-26 121.3 107 57.9
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 4.8e-26 121.3 107 57.9
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 4.8e-26 121.3 107 57.9
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 4.8e-26 121.3 107 57.9
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 4.8e-26 121.3 107 58.9
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 4.8e-26 121.3 107 59.8
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 4.8e-26 121.3 107 57.0
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 6.3e-26 120.9 107 57.9
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 6.3e-26 120.9 107 57.9
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 6.3e-26 120.9 107 57.9
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 6.3e-26 120.9 107 57.9
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 6.3e-26 120.9 107 57.9
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 6.3e-26 120.9 107 57.9
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 6.3e-26 120.9 107 57.9
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 6.3e-26 120.9 107 57.9
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 6.3e-26 120.9 107 57.0
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 6.3e-26 120.9 107 57.0
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 6.3e-26 120.9 107 57.9
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 6.3e-26 120.9 107 57.9
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 6.3e-26 120.9 107 57.9
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 6.3e-26 120.9 107 57.0
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 8.2e-26 120.6 107 57.0
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 8.2e-26 120.6 107 57.9
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 1.1e-25 120.2 107 57.9
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.1e-25 120.2 107 57.9
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 1.1e-25 120.2 107 57.0
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 1.1e-25 120.2 107 57.0
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 1.1e-25 120.2 107 58.9
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.4e-25 119.8 107 56.1
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 1.4e-25 119.8 107 57.0
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 1.4e-25 119.8 107 56.1
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 1.4e-25 119.8 107 57.0
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 1.8e-25 119.4 107 57.0
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 1.8e-25 119.4 107 57.0
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.8e-25 119.4 107 57.0
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 1.8e-25 119.4 107 56.1
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.8e-25 119.4 102 58.8
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 2.4e-25 119.0 107 56.1
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 2.4e-25 119.0 107 56.1
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 2.4e-25 119.0 107 56.1
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 2.4e-25 119.0 107 56.1
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 3.1e-25 118.6 107 57.0
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 4.1e-25 118.2 107 57.0
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 4.1e-25 118.2 107 57.0
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 5.3e-25 117.9 107 56.1
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 5.3e-25 117.9 107 57.0
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 5.3e-25 117.9 107 56.1
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 5.3e-25 117.9 107 56.1
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 5.3e-25 117.9 107 57.0
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 7.0e-25 117.5 107 57.0
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 7.0e-25 117.5 107 57.0
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 7.0e-25 117.5 107 56.1
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 9.1e-25 117.1 107 57.0
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 9.1e-25 117.1 107 55.1
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 9.1e-25 117.1 107 57.0
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 9.1e-25 117.1 107 57.0
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 1.2e-24 116.7 107 56.1
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 1.2e-24 116.7 107 57.0
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 1.6e-24 116.3 107 54.2
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 2.0e-24 115.9 107 55.1
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 2.0e-24 115.9 107 52.3
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 2.0e-24 115.9 107 56.1
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 2.0e-24 115.9 107 55.1
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 2.6e-24 115.5 107 57.0
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 2.6e-24 115.5 107 56.1
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 5.9e-24 114.4 107 56.1
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 5.9e-24 114.4 107 55.1
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 7.7e-24 114.0 107 56.1
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 7.7e-24 114.0 107 55.1
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 7.7e-24 114.0 107 55.1
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 1.0e-23 113.6 107 54.2
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 1.0e-23 113.6 123 51.2
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 1.3e-23 113.2 107 54.2
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 1.3e-23 113.2 107 55.1
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 2.9e-23 112.1 107 55.1
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 2.9e-23 112.1 107 54.2
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 3.8e-23 111.7 107 53.3
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 3.8e-23 111.7 107 53.3
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 3.8e-23 111.7 107 52.3
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 5.0e-23 111.3 133 48.1
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 5.0e-23 111.3 105 54.3
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 8.5e-23 110.5 107 53.3
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 1.1e-22 110.2 107 53.3
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.5e-22 109.8 117 51.3
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.5e-22 109.8 107 50.5
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 1.9e-22 109.4 93 55.9
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 1.9e-22 109.4 93 55.9
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 3.2e-22 108.6 95 58.9
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.6e-21 106.3 102 52.0
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 2.1e-21 105.9 102 52.9
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 2.7e-21 105.5 105 52.4
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 8.0e-21 104.0 102 50.0
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.0e-20 103.6 102 51.0
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 1.0e-20 103.6 107 53.3
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 1.8e-20 102.8 102 49.0
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 5.2e-20 101.3 102 47.1
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 6.8e-20 100.9 83 61.4
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 4.8e-18 94.7 102 45.1
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 7.0e-17 90.9 107 48.6
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 1.9e-14 82.8 103 43.7
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 2.5e-14 82.4 73 53.4
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 7.2e-14 80.9 105 38.1
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 9.4e-14 80.5 107 44.9
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 1.4e-12 76.6 61 62.3
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 1.8e-12 76.3 84 51.2
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 2.3e-12 75.9 60 66.7
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 2.3e-12 75.9 103 38.8
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 2.3e-12 75.9 100 42.0
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 2.3e-12 75.9 60 66.7
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 1.2e-11 73.6 69 58.0
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 9.8e-11 70.5 60 61.7
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 3.7e-10 68.6 101 42.6
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 8.3e-10 67.4 108 34.3
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 2.9e-07 58.9 75 44.0
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 3.8e-07 58.5 105 31.4
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 3.3e-06 55.5 107 39.3
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 3.3e-06 55.5 107 39.3
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 3.3e-06 55.5 62 51.6
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 7.2e-06 54.3 51 58.8


User provided reference genes

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