Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 0.0e+00 1288.1 659 100.0
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 2.1e-307 1058.5 578 95.2
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.2e-276 954.9 673 78.9
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 7.7e-254 880.6 684 73.5
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 4.5e-238 828.2 596 77.7
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.8e-187 659.4 462 78.6
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 4.5e-185 652.1 476 77.1
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 2.9e-152 543.1 692 51.6
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 1.3e-144 517.7 734 49.0
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 4.7e-110 402.9 778 39.2
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 3.7e-99 366.7 762 36.9
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 5.4e-98 362.8 708 38.4
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 6.8e-93 345.9 693 38.1
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 1.2e-92 345.1 802 35.3
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 2.2e-91 340.9 683 37.8
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 6.4e-91 339.3 707 38.5
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 2.1e-89 334.3 689 37.6
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 6.0e-89 332.8 677 36.2
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 6.0e-89 332.8 675 36.0
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 1.5e-87 328.2 665 37.3
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 5.8e-84 316.2 692 35.3
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 8.4e-83 312.4 788 34.4
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 1.4e-82 311.6 704 35.7
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 1.6e-81 308.1 681 36.1
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 1.7e-80 304.7 692 35.3
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 3.9e-80 303.5 706 36.1
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 2.5e-79 300.8 707 34.2
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 4.3e-79 300.1 708 33.9
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 5.6e-79 299.7 710 33.5
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 9.6e-79 298.9 695 36.1
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 2.8e-78 297.4 685 34.2
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 4.8e-78 296.6 719 33.5
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 2.4e-77 294.3 754 32.9
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 2.4e-77 294.3 679 36.1
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 5.3e-77 293.1 723 32.9
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 9.0e-77 292.4 735 33.2
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 1.2e-76 292.0 698 32.7
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 5.8e-76 289.7 687 34.6
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 8.4e-75 285.8 700 33.7
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 5.4e-74 283.1 721 34.4
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 1.2e-73 282.0 689 36.3
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 3.5e-73 280.4 713 34.5
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 6.0e-73 279.6 688 33.6
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 1.8e-72 278.1 685 34.3
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 1.1e-71 275.4 698 32.7
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 4.3e-71 273.5 679 32.4
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 7.4e-71 272.7 678 32.4
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 9.6e-71 272.3 700 33.7
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 8.1e-70 269.2 716 32.1
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 1.4e-69 268.5 703 32.1
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 1.8e-69 268.1 777 33.3
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 2.4e-69 267.7 754 32.1
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 4.0e-69 266.9 697 33.9
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 9.0e-69 265.8 733 32.5
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 2.6e-68 264.2 633 35.1
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 3.4e-68 263.8 796 31.5
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 4.5e-68 263.5 725 33.4
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 2.9e-67 260.8 793 31.0
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 2.9e-67 260.8 720 33.3
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 4.9e-67 260.0 730 31.8
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 8.4e-67 259.2 712 29.2
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 2.5e-66 257.7 806 30.4
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 3.2e-66 257.3 725 31.6
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 4.2e-66 256.9 743 31.2
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 7.1e-66 256.1 694 32.3
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 2.7e-65 254.2 713 30.0
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 3.5e-65 253.8 437 40.5
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 3.5e-65 253.8 696 31.8
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 4.6e-65 253.4 732 30.2
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 7.9e-65 252.7 727 31.5
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 7.9e-65 252.7 757 31.0
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 5.7e-63 246.5 762 30.6
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 9.6e-63 245.7 757 30.4
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 1.6e-62 245.0 773 30.5
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 3.7e-62 243.8 706 30.0
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 1.4e-61 241.9 753 30.4
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 6.9e-61 239.6 772 30.6
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 5.8e-60 236.5 493 36.5
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 1.0e-59 235.7 662 31.0
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 3.2e-58 230.7 734 30.8
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 4.2e-58 230.3 673 31.4
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 4.6e-57 226.9 832 28.8
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 7.9e-57 226.1 728 28.8
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 1.0e-56 225.7 746 29.6
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 3.9e-56 223.8 730 29.5
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 1.6e-54 218.4 444 35.8
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 2.2e-54 218.0 761 29.6
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 3.7e-54 217.2 435 34.7
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 1.4e-53 215.3 490 35.1
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 3.1e-53 214.2 694 29.8
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 4.5e-52 210.3 807 26.9
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 2.9e-51 207.6 676 28.8
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 1.9e-50 204.9 306 41.5
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 5.5e-50 203.4 686 30.0
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 1.7e-46 191.8 693 26.7
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 1.4e-45 188.7 220 48.2
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 5.3e-45 186.8 410 33.4
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 7.4e-39 166.4 626 30.4
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 5.5e-34 150.2 317 34.4
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 7.5e-31 139.8 292 37.0
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 1.7e-30 138.7 151 50.3
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 1.8e-29 135.2 132 56.1
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 5.3e-29 133.7 667 25.0
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 2.7e-28 131.3 91 71.4
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 1.7e-27 128.6 120 55.0
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 3.8e-27 127.5 705 27.2
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 1.6e-25 122.1 490 27.8
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 2.3e-24 118.2 207 34.3
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 3.0e-24 117.9 206 36.4
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 1.9e-18 98.6 121 48.8
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 1.2e-17 95.9 469 23.5
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 4.7e-17 94.0 279 30.5
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 6.3e-14 83.6 163 35.6
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 3.1e-13 81.3 77 54.5
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 9.2e-13 79.7 172 35.5
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 1.2e-12 79.3 59 64.4
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 6.6e-11 73.6 151 35.1
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 1.1e-10 72.8 79 50.6
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 3.3e-10 71.2 79 50.6
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 3.3e-10 71.2 79 50.6
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 1.2e-09 69.3 80 55.0
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 3.0e-08 64.7 162 33.3
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 2.2e-06 58.5 183 27.3


User provided reference genes

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