Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0494641 Rosa chinensis HOM05D003327 ORTHO05D024129 2.2e-137 492.3 246 100.0
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 8.6e-65 251.1 225 61.8
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 1.0e-62 244.2 231 59.3
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.8e-59 233.4 192 64.6
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 1.3e-57 227.3 227 56.8
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 8.0e-55 218.0 231 53.7
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 3.4e-53 212.6 231 54.1
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 2.0e-50 203.4 189 61.4
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 4.7e-47 192.2 206 55.3
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 6.2e-47 191.8 210 51.0
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 3.7e-44 182.6 215 50.2
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 2.3e-41 173.3 231 47.2
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 2.5e-40 169.9 101 79.2
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 2.5e-40 169.9 83 96.4
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 1.6e-39 167.2 232 46.6
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 1.5e-37 160.6 231 45.0
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 9.9e-37 157.9 233 44.2
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 2.9e-36 156.4 201 46.3
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 2.4e-35 153.3 199 46.7
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 4.1e-35 152.5 231 43.7
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 5.4e-35 152.1 231 43.3
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 3.5e-34 149.4 199 45.2
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 4.6e-34 149.1 199 45.7
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 3.9e-33 146.0 227 42.7
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 8.6e-33 144.8 232 41.8
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 9.6e-32 141.4 192 47.9
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 1.7e-28 130.6 250 36.8
Ciclev10027259m.g Citrus clementina HOM05D003327 ORTHO05D024129 5.4e-27 125.6 164 47.0
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 3.5e-26 122.9 207 38.6
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 6.0e-26 122.1 224 36.6
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 7.8e-26 121.7 199 40.2
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 2.3e-25 120.2 199 40.2
ECA238G3940 Erigeron canadensis HOM05D003327 ORTHO05D004535 9.6e-24 114.8 147 50.3
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 4.8e-23 112.5 82 68.3
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 6.2e-23 112.1 257 33.1
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 6.2e-23 112.1 257 33.1
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 1.1e-22 111.3 75 76.0
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 3.1e-22 109.8 213 37.1
RcHm_v2.0_Chr6g0275031 Rosa chinensis HOM05D003327 ORTHO05D004535 6.9e-22 108.6 228 35.5
BcaB01g02535 Brassica carinata HOM05D003327 ORTHO05D024129 2.6e-21 106.7 84 63.1
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.7e-20 104.0 71 73.2
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 6.4e-20 102.1 199 35.2
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 1.1e-19 101.3 249 31.3
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.4e-19 100.1 216 34.7
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 4.2e-19 99.4 215 34.0
Ciclev10003936m.g Citrus clementina HOM05D003327 ORTHO05D152217 9.3e-19 98.2 240 34.6
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 1.2e-18 97.8 214 33.2
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 2.1e-18 97.1 215 33.0
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 2.1e-18 97.1 213 34.7
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 4.6e-18 95.9 211 33.6
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 7.9e-18 95.1 249 31.3
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 1.0e-17 94.7 214 33.6
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.0e-17 94.7 214 33.6
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.0e-17 94.7 214 33.6
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.0e-17 94.7 214 33.6
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 1.0e-17 94.7 209 33.5
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 1.0e-17 94.7 209 33.5
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 1.3e-17 94.4 215 32.1
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 1.8e-17 94.0 211 33.2
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.3e-17 93.6 212 32.1
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 8.7e-17 91.7 80 58.8
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 1.5e-16 90.9 212 32.5
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 2.5e-16 90.1 212 31.6
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 2.5e-16 90.1 209 33.0
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 2.5e-16 90.1 215 31.6
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 3.3e-16 89.7 210 31.9
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 5.6e-16 89.0 209 31.6
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 9.6e-16 88.2 63 68.3
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 9.6e-16 88.2 210 31.9
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.3e-15 87.8 215 31.2
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 2.8e-15 86.7 213 30.5
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 3.6e-15 86.3 195 34.4
BcaB01g02538 Brassica carinata HOM05D003327 ORTHO05D004535 4.8e-15 85.9 163 35.0
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 6.2e-15 85.5 215 30.7
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 1.1e-14 84.7 211 32.2
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 1.1e-14 84.7 211 32.2
Dinv12916 Davidia involucrata HOM05D003327 ORTHO05D004535 3.1e-14 83.2 68 63.2
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 1.2e-13 81.3 203 31.0
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 2.0e-13 80.5 212 29.2
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.0e-13 80.5 203 30.0
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 2.0e-13 80.5 197 31.5
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 2.6e-13 80.1 201 31.3
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 2.6e-13 80.1 204 30.9
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 2.6e-13 80.1 203 30.5
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 3.4e-13 79.7 197 31.5
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 3.4e-13 79.7 208 29.3
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 3.4e-13 79.7 209 31.1
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 3.4e-13 79.7 208 29.3
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.5e-13 79.3 208 30.8
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 4.5e-13 79.3 208 30.8
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 9.9e-13 78.2 211 28.9
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 9.9e-13 78.2 57 64.9
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 1.3e-12 77.8 57 66.7
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 2.2e-12 77.0 199 30.7
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.9e-12 76.6 58 67.2
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 2.9e-12 76.6 213 29.1
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 3.8e-12 76.3 208 30.3
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 3.8e-12 76.3 211 28.4
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 3.8e-12 76.3 211 28.4
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 3.8e-12 76.3 211 28.4
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 3.8e-12 76.3 211 28.4
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 3.8e-12 76.3 211 28.4
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 3.8e-12 76.3 208 28.8
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 6.4e-12 75.5 199 30.2
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 6.4e-12 75.5 199 30.2
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 6.4e-12 75.5 199 30.2
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 6.4e-12 75.5 199 30.2
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 1.1e-11 74.7 205 28.3
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 1.1e-11 74.7 201 28.9
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 1.4e-11 74.3 202 28.7
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 1.4e-11 74.3 199 30.2
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 1.4e-11 74.3 199 30.7
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 1.4e-11 74.3 198 30.3
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 2.4e-11 73.6 198 30.3
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 2.4e-11 73.6 207 29.5
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 3.2e-11 73.2 202 28.7
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 4.2e-11 72.8 188 31.9
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 4.2e-11 72.8 199 29.6
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 7.1e-11 72.0 249 28.1
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 7.1e-11 72.0 205 27.8
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 7.1e-11 72.0 197 29.4
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 7.1e-11 72.0 197 29.4
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 1.6e-10 70.9 195 29.2
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 2.1e-10 70.5 197 30.5
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 2.1e-10 70.5 197 28.4
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 2.7e-10 70.1 195 29.2
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 2.7e-10 70.1 48 70.8
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 3.5e-10 69.7 203 29.1
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 3.5e-10 69.7 99 41.4
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 3.5e-10 69.7 210 29.0
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 4.6e-10 69.3 197 28.9
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 1.0e-09 68.2 197 28.9
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 2.3e-09 67.0 45 71.1
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 2.3e-09 67.0 46 69.6
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 6.7e-09 65.5 195 27.7
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 8.7e-09 65.1 52 61.5
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 8.7e-09 65.1 199 28.1
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 1.9e-08 63.9 195 26.7
Prupe.2G325100 Prunus persica HOM05D003327 ORTHO05D004535 2.5e-08 63.5 54 61.1
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 3.3e-08 63.2 44 63.6
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 7.4e-08 62.0 259 24.3
SHI26728 Sapria himalayana HOM05D003327 ORTHO05D024129 7.4e-08 62.0 74 50.0
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 9.6e-08 61.6 49 61.2
Rhsim05G0039100 Rhododendron simsii HOM05D003327 ORTHO05D024129 9.6e-08 61.6 67 53.7
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 2.1e-07 60.5 42 69.0
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 2.1e-07 60.5 199 28.1
Prupe.3G207300 Prunus persica HOM05D003327 ORTHO05D004535 2.1e-07 60.5 174 30.5
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 2.8e-07 60.1 42 66.7
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 6.2e-07 58.9 247 26.3
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 8.1e-07 58.5 193 26.9
Nn2g15288 Nelumbo nucifera HOM05D003327 ORTHO05D004535 3.1e-06 56.6 42 66.7
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 9.0e-06 55.1 38 65.8
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 9.0e-06 55.1 197 27.4


User provided reference genes

Program Settings