Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 6.0e-45 183.7 88 100.0
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 6.2e-26 120.6 88 73.9
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 2.9e-23 111.7 60 91.7
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 2.2e-18 95.5 55 85.5
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 1.1e-17 93.2 55 83.6
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.1e-17 93.2 55 83.6
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.1e-17 93.2 55 83.6
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.1e-17 93.2 55 83.6
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 3.8e-15 84.7 59 67.8
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 6.5e-15 84.0 55 70.9
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 6.5e-15 84.0 61 65.6
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 6.5e-15 84.0 62 62.9
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 8.5e-15 83.6 55 72.7
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 8.5e-15 83.6 55 67.3
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 8.5e-15 83.6 55 72.7
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 1.1e-14 83.2 55 70.9
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.1e-14 83.2 55 67.3
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.1e-14 83.2 55 67.3
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 1.4e-14 82.8 55 72.7
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 1.9e-14 82.4 55 67.3
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 2.5e-14 82.0 55 70.9
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 2.5e-14 82.0 55 69.1
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 3.2e-14 81.6 53 71.7
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 4.2e-14 81.3 55 67.3
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 4.2e-14 81.3 61 62.3
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 4.2e-14 81.3 52 75.0
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 5.5e-14 80.9 53 73.6
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 5.5e-14 80.9 53 73.6
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 7.2e-14 80.5 54 68.5
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 7.2e-14 80.5 54 70.4
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 9.4e-14 80.1 54 70.4
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 9.4e-14 80.1 53 73.6
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 1.6e-13 79.3 55 63.6
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 2.1e-13 79.0 54 66.7
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 2.1e-13 79.0 53 67.9
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 2.7e-13 78.6 52 69.2
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.7e-13 78.6 53 69.8
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 2.7e-13 78.6 51 72.5
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 3.6e-13 78.2 54 66.7
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 4.6e-13 77.8 53 67.9
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 4.6e-13 77.8 52 71.2
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 6.1e-13 77.4 52 67.3
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 6.1e-13 77.4 52 69.2
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 6.1e-13 77.4 53 69.8
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 6.1e-13 77.4 53 69.8
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 7.9e-13 77.0 61 60.7
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 7.9e-13 77.0 53 69.8
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 7.9e-13 77.0 52 69.2
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 1.0e-12 76.6 58 60.3
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.0e-12 76.6 60 63.3
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 1.0e-12 76.6 58 62.1
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 1.4e-12 76.3 55 65.5
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 1.4e-12 76.3 52 69.2
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 1.4e-12 76.3 59 62.7
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.4e-12 76.3 56 64.3
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 1.8e-12 75.9 52 67.3
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.8e-12 75.9 61 60.7
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.8e-12 75.9 55 65.5
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 1.8e-12 75.9 52 67.3
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.8e-12 75.9 52 69.2
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 1.8e-12 75.9 55 63.6
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 2.3e-12 75.5 52 65.4
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 3.0e-12 75.1 81 43.2
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 3.0e-12 75.1 59 62.7
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 3.0e-12 75.1 52 63.5
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 3.0e-12 75.1 58 60.3
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 3.9e-12 74.7 61 55.7
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 5.1e-12 74.3 58 58.6
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 6.7e-12 73.9 58 63.8
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 6.7e-12 73.9 53 67.9
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 8.8e-12 73.6 50 68.0
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.1e-11 73.2 61 55.7
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 1.1e-11 73.2 61 54.1
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 1.5e-11 72.8 55 63.6
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 1.5e-11 72.8 60 53.3
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.0e-11 72.4 50 66.0
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 2.0e-11 72.4 56 60.7
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 2.5e-11 72.0 49 67.3
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 2.5e-11 72.0 51 62.7
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 2.5e-11 72.0 51 62.7
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 2.5e-11 72.0 51 62.7
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 2.5e-11 72.0 51 62.7
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 2.5e-11 72.0 51 62.7
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 2.5e-11 72.0 51 62.7
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 2.5e-11 72.0 49 67.3
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 2.5e-11 72.0 49 67.3
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 2.5e-11 72.0 51 64.7
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 2.5e-11 72.0 53 62.3
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 2.5e-11 72.0 52 57.7
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 3.3e-11 71.6 53 66.0
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 4.3e-11 71.2 53 56.6
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 5.7e-11 70.9 55 58.2
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 9.7e-11 70.1 61 50.8
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 2.2e-10 68.9 52 61.5
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 2.2e-10 68.9 59 59.3
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 2.8e-10 68.6 56 58.9
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 2.8e-10 68.6 56 58.9
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 3.7e-10 68.2 59 57.6
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 6.3e-10 67.4 49 59.2
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 6.3e-10 67.4 55 56.4
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 1.1e-09 66.6 59 57.6
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.1e-09 66.6 63 55.6
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.4e-09 65.5 45 71.1
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 3.1e-09 65.1 56 55.4
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 2.0e-08 62.4 59 49.2
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 1.0e-07 60.1 66 47.0
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 1.3e-07 59.7 66 47.0
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 2.9e-07 58.5 66 47.0


User provided reference genes

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