Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0113541 Rosa chinensis HOM05D000572 ORTHO05D002399 4.3e-49 197.6 95 100.0
Prupe.7G183100 Prunus persica HOM05D000572 ORTHO05D002399 2.1e-27 125.6 67 88.1
MD02G1115100 Malus domestica HOM05D000572 ORTHO05D002399 8.0e-27 123.6 67 86.6
Prupe.7G060100 Prunus persica HOM05D000572 ORTHO05D002399 2.3e-26 122.1 67 86.6
MD15G1231100 Malus domestica HOM05D000572 ORTHO05D002399 6.7e-26 120.6 67 85.1
Gohir.A05G373000 Gossypium hirsutum HOM05D000572 ORTHO05D002399 2.6e-25 118.6 67 83.6
Gorai.012G048000 Gossypium raimondii HOM05D000572 ORTHO05D002399 2.6e-25 118.6 67 83.6
Ca_03350_v3 Cicer arietinum L. HOM05D000572 ORTHO05D002399 4.4e-25 117.9 67 83.6
Manes.13G119400 Manihot esculenta HOM05D000572 ORTHO05D002399 4.4e-25 117.9 67 82.1
QL10p035076 Quercus lobata HOM05D000572 ORTHO05D002399 4.4e-25 117.9 67 83.6
RcHm_v2.0_Chr2g0097141 Rosa chinensis HOM05D000572 ORTHO05D002399 4.4e-25 117.9 67 82.1
Eucgr.I00036 Eucalyptus grandis HOM05D000572 ORTHO05D002399 5.7e-25 117.5 67 80.6
VMungo0464G1539 Vigna mungo HOM05D000572 ORTHO05D002399 5.7e-25 117.5 67 82.1
CiPaw.12G053900 Carya illinoinensis HOM05D000572 ORTHO05D002399 7.5e-25 117.1 67 82.1
Gohir.D04G042500 Gossypium hirsutum HOM05D000572 ORTHO05D002399 7.5e-25 117.1 67 82.1
TAR633G0967 Trochodendron aralioides HOM05D000572 ORTHO05D002399 7.5e-25 117.1 67 82.1
Thecc.01G144800 Theobroma cacao HOM05D000572 ORTHO05D002399 1.3e-24 116.3 67 82.1
Duzib147G0313 Durio zibethinus HOM05D000572 ORTHO05D002399 2.2e-24 115.5 67 80.6
Manes.13G155232 Manihot esculenta HOM05D000572 ORTHO05D002399 2.2e-24 115.5 67 82.1
Lj5g0006387 Lotus japonicus HOM05D000572 ORTHO05D002399 2.8e-24 115.2 67 80.6
Lalb_Chr01g0008651 Lupinus albus HOM05D000572 ORTHO05D002399 2.8e-24 115.2 67 79.1
FvH4_1g10300 Fragaria vesca HOM05D000572 ORTHO05D002399 6.3e-24 114.0 67 79.1
FAN19G1502 Fragaria x ananassa HOM05D000572 ORTHO05D002399 6.3e-24 114.0 67 79.1
FAN26G0750 Fragaria x ananassa HOM05D000572 ORTHO05D002399 6.3e-24 114.0 67 79.1
Glyma.04G187600 Glycine max HOM05D000572 ORTHO05D002399 6.3e-24 114.0 67 80.6
Glyma.06G178200 Glycine max HOM05D000572 ORTHO05D002399 6.3e-24 114.0 67 80.6
VMungo0464G1362 Vigna mungo HOM05D000572 ORTHO05D002399 6.3e-24 114.0 67 79.1
Haze_19377 Corylus avellana HOM05D000572 ORTHO05D002399 8.2e-24 113.6 67 80.6
Medtr2g046020 Medicago truncatula HOM05D000572 ORTHO05D002399 8.2e-24 113.6 67 79.1
Medtr6g065580 Medicago truncatula HOM05D000572 ORTHO05D002399 8.2e-24 113.6 67 79.1
Cc07_g19880 Coffea canephora HOM05D000572 ORTHO05D002399 1.1e-23 113.2 67 80.6
Lj2g0020412 Lotus japonicus HOM05D000572 ORTHO05D002399 1.1e-23 113.2 67 79.1
Lj3g0025806 Lotus japonicus HOM05D000572 ORTHO05D002399 1.1e-23 113.2 67 79.1
Phvul.004G133200 Phaseolus vulgaris HOM05D000572 ORTHO05D002399 1.1e-23 113.2 67 79.1
GSVIVG01000263001 Vitis vinifera HOM05D000572 ORTHO05D002399 1.1e-23 113.2 67 80.6
arahy.Tifrunner.gnm1.ann1.5512QZ Arachis hypogaea HOM05D000572 ORTHO05D002399 1.8e-23 112.5 67 76.1
AL7G42270 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 2.4e-23 112.1 73 71.2
Potri.T046100 Populus trichocarpa HOM05D000572 ORTHO05D002399 2.4e-23 112.1 67 79.1
GSVIVG01000262001 Vitis vinifera HOM05D000572 ORTHO05D002399 2.4e-23 112.1 67 79.1
MSTRG.27892 Avicennia marina HOM05D000572 ORTHO05D002399 3.1e-23 111.7 67 77.6
CANSAT01G1917 Cannabis sativa HOM05D000572 ORTHO05D002399 3.1e-23 111.7 67 77.6
Psat1g114520 Pisum sativum HOM05D000572 ORTHO05D002399 3.1e-23 111.7 67 77.6
PGR119G1310 Punica granatum HOM05D000572 ORTHO05D002399 3.1e-23 111.7 67 77.6
THA.LOC104820805 Tarenaya hassleriana HOM05D000572 ORTHO05D002399 3.1e-23 111.7 67 77.6
Atru.chr1.1803 Acer truncatum HOM05D000572 ORTHO05D002399 4.1e-23 111.3 67 77.6
Sabra19G0000100 Salix brachista HOM05D000572 ORTHO05D002399 4.1e-23 111.3 67 79.1
arahy.Tifrunner.gnm1.ann1.I0VWWF Arachis hypogaea HOM05D000572 ORTHO05D002399 5.3e-23 110.9 67 73.1
Dinv19128 Davidia involucrata HOM05D000572 ORTHO05D002399 5.3e-23 110.9 67 80.6
Nitab4.5_0004345g0030 Nicotiana tabacum HOM05D000572 ORTHO05D002399 5.3e-23 110.9 67 77.6
TPR.G12077 Trifolium pratense HOM05D000572 ORTHO05D002399 5.3e-23 110.9 67 77.6
RcHm_v2.0_Chr5g0051581 Rosa chinensis HOM05D000572 ORTHO05D002399 7.0e-23 110.5 67 77.6
TPR.G37023 Trifolium pratense HOM05D000572 ORTHO05D002399 7.0e-23 110.5 67 76.1
AT4G14140 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 1.2e-22 109.8 67 74.6
Potri.018G138000 Populus trichocarpa HOM05D000572 ORTHO05D002399 1.6e-22 109.4 67 76.1
Lalb_Chr03g0033391 Lupinus albus HOM05D000572 ORTHO05D002399 2.0e-22 109.0 67 73.1
CSS0016257 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 2.7e-22 108.6 67 77.6
CSS0042457 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 2.7e-22 108.6 67 77.6
Nitab4.5_0004640g0010 Nicotiana tabacum HOM05D000572 ORTHO05D002399 2.7e-22 108.6 67 76.1
PSO210G2968 Papaver somniferum HOM05D000572 ORTHO05D002399 2.7e-22 108.6 67 74.6
Potri.004G134000 Populus trichocarpa HOM05D000572 ORTHO05D002399 2.7e-22 108.6 67 77.6
Sabra04G0084200 Salix brachista HOM05D000572 ORTHO05D002399 2.7e-22 108.6 67 77.6
Aa31LG11G8250 Aethionema arabicum HOM05D000572 ORTHO05D002399 3.5e-22 108.2 67 71.6
AL7G42980 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 3.5e-22 108.2 67 74.6
BcaC06g30720 Brassica carinata HOM05D000572 ORTHO05D002399 3.5e-22 108.2 67 74.6
CDE12G0633 Ceratophyllum demersum HOM05D000572 ORTHO05D002399 3.5e-22 108.2 67 76.1
Dinv29626 Davidia involucrata HOM05D000572 ORTHO05D002399 3.5e-22 108.2 67 76.1
Dinv29674 Davidia involucrata HOM05D000572 ORTHO05D002399 3.5e-22 108.2 67 77.6
Nn5g27348 Nelumbo nucifera HOM05D000572 ORTHO05D002399 3.5e-22 108.2 67 76.1
ClCG11G000400 Citrullus lanatus HOM05D000572 ORTHO05D002399 7.7e-22 107.1 67 74.6
MELO3C026448.2 Cucumis melo HOM05D000572 ORTHO05D002399 7.7e-22 107.1 67 74.6
CsaV3_5G013990 Cucumis sativus L. HOM05D000572 ORTHO05D002399 7.7e-22 107.1 67 74.6
Actinidia19530 Actinidia chinensis HOM05D000572 ORTHO05D002399 1.0e-21 106.7 67 73.1
BolC7t44532H Brassica oleracea HOM05D000572 ORTHO05D002399 1.0e-21 106.7 67 74.6
CAN.G1330.38 Capsicum annuum HOM05D000572 ORTHO05D002399 1.0e-21 106.7 67 73.1
Sed0009647 Sechium edule HOM05D000572 ORTHO05D002399 1.0e-21 106.7 67 74.6
Solyc11g030600.3 Solanum lycopersicum HOM05D000572 ORTHO05D002399 1.0e-21 106.7 67 73.1
Sopen11g013460 Solanum pennellii HOM05D000572 ORTHO05D002399 1.0e-21 106.7 67 73.1
PGSC0003DMG400030941 Solanum tuberosum HOM05D000572 ORTHO05D002399 1.0e-21 106.7 67 73.1
AL7G42360 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 1.3e-21 106.3 67 74.6
C07p39990 Brassica napus HOM05D000572 ORTHO05D002399 1.3e-21 106.3 67 73.1
SGA_v2.0_scaffold8G04469 Striga asiatica HOM05D000572 ORTHO05D002399 1.7e-21 105.9 67 73.1
Atru.chr12.1878 Acer truncatum HOM05D000572 ORTHO05D002399 2.2e-21 105.5 66 75.8
Carub.0004s0387 Capsella rubella HOM05D000572 ORTHO05D002399 2.2e-21 105.5 67 71.6
Rhsim11G0118300 Rhododendron simsii HOM05D000572 ORTHO05D002399 2.2e-21 105.5 67 74.6
BcaB06g27851 Brassica carinata HOM05D000572 ORTHO05D002399 2.9e-21 105.1 67 73.1
CAN.G868.5 Capsicum annuum HOM05D000572 ORTHO05D002399 2.9e-21 105.1 67 71.6
DCAR_019941 Daucus carota HOM05D000572 ORTHO05D002399 2.9e-21 105.1 67 74.6
AT4G08990 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 3.8e-21 104.8 67 70.1
vmacro01683 Vaccinium macrocarpon HOM05D000572 ORTHO05D002399 3.8e-21 104.8 67 74.6
A06p38240 Brassica napus HOM05D000572 ORTHO05D002399 5.0e-21 104.4 67 71.6
BraA06t26739Z Brassica rapa HOM05D000572 ORTHO05D002399 5.0e-21 104.4 67 71.6
PSO447G0024 Papaver somniferum HOM05D000572 ORTHO05D002399 5.0e-21 104.4 67 71.6
Sp4g01970 Schrenkiella parvula HOM05D000572 ORTHO05D002399 5.0e-21 104.4 67 71.6
EL10Ac8g18295 Beta vulgaris HOM05D000572 ORTHO05D002399 6.5e-21 104.0 67 74.6
Peaxi162Scf01053g00039 Petunia axillaris HOM05D000572 ORTHO05D002399 6.5e-21 104.0 67 73.1
MBI03_g20877_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 8.5e-21 103.6 67 70.1
Oeu032220.1 Olea europaea HOM05D000572 ORTHO05D002399 8.5e-21 103.6 67 68.7
Oeu046383.1 Olea europaea HOM05D000572 ORTHO05D002399 8.5e-21 103.6 67 68.7
SGA_v2.0_scaffold122G33283 Striga asiatica HOM05D000572 ORTHO05D002399 8.5e-21 103.6 67 70.1
Lj5A282T76 Lonicera japonica HOM05D000572 ORTHO05D002399 1.5e-20 102.8 67 73.1
Hund15395 Selenicereus undatus HOM05D000572 ORTHO05D002399 1.5e-20 102.8 67 71.6
Thhalv10005683m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 1.9e-20 102.4 67 73.1
Sc02g0000170 Simmondsia chinensis HOM05D000572 ORTHO05D002399 1.9e-20 102.4 67 68.7
Lsat_1_v5_gn_7_75121 Lactuca sativa HOM05D000572 ORTHO05D002399 2.5e-20 102.1 67 68.7
Sp2g19890 Schrenkiella parvula HOM05D000572 ORTHO05D002399 2.5e-20 102.1 67 73.1
TWI15G0599 Tripterygium wilfordii HOM05D000572 ORTHO05D002399 2.5e-20 102.1 67 70.1
GSVIVG01023152001 Vitis vinifera HOM05D000572 ORTHO05D002399 2.5e-20 102.1 67 70.1
ATR0584G123 Amborella trichopoda HOM05D000572 ORTHO05D002399 3.2e-20 101.7 67 71.6
Lj2A766T19 Lonicera japonica HOM05D000572 ORTHO05D002399 3.2e-20 101.7 67 70.1
THA.LOC104823726 Tarenaya hassleriana HOM05D000572 ORTHO05D002399 4.2e-20 101.3 67 73.1
HPP92_005803 Vanilla planifolia HOM05D000572 ORTHO05D002399 4.2e-20 101.3 67 70.1
AT5G49160 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 5.5e-20 100.9 67 70.1
DCAR_009626 Daucus carota HOM05D000572 ORTHO05D002399 5.5e-20 100.9 67 70.1
Thhalv10003514m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 5.5e-20 100.9 67 71.6
A04p17510 Brassica napus HOM05D000572 ORTHO05D002399 7.2e-20 100.5 67 68.7
BcaC02g08585 Brassica carinata HOM05D000572 ORTHO05D002399 9.4e-20 100.1 67 68.7
BcaC07g41015 Brassica carinata HOM05D000572 ORTHO05D002399 9.4e-20 100.1 67 68.7
A09p57170 Brassica napus HOM05D000572 ORTHO05D002399 9.4e-20 100.1 67 68.7
C04p52290 Brassica napus HOM05D000572 ORTHO05D002399 9.4e-20 100.1 67 68.7
C08p40170 Brassica napus HOM05D000572 ORTHO05D002399 9.4e-20 100.1 67 68.7
BolC8t51587H Brassica oleracea HOM05D000572 ORTHO05D002399 9.4e-20 100.1 67 68.7
BraA09t41110Z Brassica rapa HOM05D000572 ORTHO05D002399 9.4e-20 100.1 67 68.7
AL8G22690 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 1.2e-19 99.8 67 70.1
CDE01G0823 Ceratophyllum demersum HOM05D000572 ORTHO05D002399 1.2e-19 99.8 66 71.2
HanXRQChr04g0120041 Helianthus annuus HOM05D000572 ORTHO05D002399 1.2e-19 99.8 67 67.2
HanXRQChr11g0347301 Helianthus annuus HOM05D000572 ORTHO05D002399 1.2e-19 99.8 67 67.2
HPP92_005786 Vanilla planifolia HOM05D000572 ORTHO05D002399 1.2e-19 99.8 67 68.7
Atru.chr6.350 Acer truncatum HOM05D000572 ORTHO05D002399 1.6e-19 99.4 67 68.7
ECA236G0624 Erigeron canadensis HOM05D000572 ORTHO05D002399 1.6e-19 99.4 67 65.7
TWI63G0302 Tripterygium wilfordii HOM05D000572 ORTHO05D002399 1.6e-19 99.4 67 68.7
Ah.04g152120 Amaranthus hybridus HOM05D000572 ORTHO05D002399 2.7e-19 98.6 67 68.7
Duzib160G0412 Durio zibethinus HOM05D000572 ORTHO05D002399 2.7e-19 98.6 67 68.7
Migut.N00875 Erythranthe guttata HOM05D000572 ORTHO05D002399 2.7e-19 98.6 67 67.2
Aqoxy7G03575 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 3.6e-19 98.2 68 69.1
Aqoxy7G03579 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 3.6e-19 98.2 68 69.1
AT4G13610 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 4.7e-19 97.8 78 61.5
Thhalv10000011m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 6.1e-19 97.4 67 65.7
CARHR182500 Cardamine hirsuta HOM05D000572 ORTHO05D002399 8.0e-19 97.1 67 67.2
CARHR070510 Cardamine hirsuta HOM05D000572 ORTHO05D002399 1.0e-18 96.7 67 67.2
Zm00001eb301620 Zea mays HOM05D000572 ORTHO05D002399 1.0e-18 96.7 67 64.2
Zm00001eb301630 Zea mays HOM05D000572 ORTHO05D002399 1.0e-18 96.7 67 64.2
Ah.01g020670 Amaranthus hybridus HOM05D000572 ORTHO05D002399 1.4e-18 96.3 67 70.1
AUR62028016 Chenopodium quinoa HOM05D000572 ORTHO05D002399 1.4e-18 96.3 67 64.2
AUR62021310 Chenopodium quinoa HOM05D000572 ORTHO05D002399 1.8e-18 95.9 67 68.7
AUR62043444 Chenopodium quinoa HOM05D000572 ORTHO05D002399 1.8e-18 95.9 67 68.7
DCAR_030658 Daucus carota HOM05D000572 ORTHO05D002399 2.3e-18 95.5 68 63.2
Carub.0008s0898 Capsella rubella HOM05D000572 ORTHO05D002399 6.8e-18 94.0 67 65.7
CARHR185450 Cardamine hirsuta HOM05D000572 ORTHO05D002399 6.8e-18 94.0 67 64.2
DCAR_003283 Daucus carota HOM05D000572 ORTHO05D002399 6.8e-18 94.0 67 67.2
Os03g0798300 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D002399 6.8e-18 94.0 67 64.2
SEGI_11646 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 1.5e-17 92.8 67 64.2
Os07g0182900 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D002399 2.0e-17 92.4 67 62.7
BraA04t17374Z Brassica rapa HOM05D000572 ORTHO05D002399 2.6e-17 92.0 78 59.0
BolC4t26803H Brassica oleracea HOM05D000572 ORTHO05D002399 3.4e-17 91.7 78 59.0
Aqoxy1G02545 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 4.4e-17 91.3 67 61.2
SHI05188 Sapria himalayana HOM05D000572 ORTHO05D002399 5.7e-17 90.9 80 53.8
Carub.0007s2893 Capsella rubella HOM05D000572 ORTHO05D002399 1.3e-16 89.7 67 62.7
CARHR287790 Cardamine hirsuta HOM05D000572 ORTHO05D002399 1.7e-16 89.4 81 55.6
Cc02_g23510 Coffea canephora HOM05D000572 ORTHO05D002399 2.2e-16 89.0 80 57.5
BcaNung05957 Brassica carinata HOM05D000572 ORTHO05D002399 2.8e-16 88.6 68 64.7
SEGI_36703 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 3.7e-16 88.2 67 61.2
Mapoly0038s0027 Marchantia polymorpha HOM05D000572 ORTHO05D002399 4.8e-16 87.8 67 55.2
SMO358G0070 Selaginella moellendorffii HOM05D000572 ORTHO05D002399 8.3e-16 87.0 67 58.2
Atru.chr6.336 Acer truncatum HOM05D000572 ORTHO05D002399 3.1e-15 85.1 57 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2421 Anthoceros agrestis HOM05D000572 ORTHO05D002399 3.1e-15 85.1 67 62.7
Pp3c11_20540 Physcomitrium patens HOM05D000572 ORTHO05D002399 7.0e-15 84.0 67 56.7
TAR628G1524 Trochodendron aralioides HOM05D000572 ORTHO05D002399 1.3e-13 79.7 66 56.1
Ca_04146_v3 Cicer arietinum L. HOM05D000572 ORTHO05D002399 2.3e-13 79.0 46 80.4
Ca_28418_v3 Cicer arietinum L. HOM05D000572 ORTHO05D002399 1.1e-12 76.6 44 81.8
Actinidia26191 Actinidia chinensis HOM05D000572 ORTHO05D002399 5.5e-12 74.3 68 60.3
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 5.5e-12 74.3 47 72.3
CSS0020456 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 2.3e-10 68.9 44 75.0
Oeu008467.1 Olea europaea HOM05D000572 ORTHO05D002399 3.0e-10 68.6 68 52.9
DCAR_021657 Daucus carota HOM05D000572 ORTHO05D002399 5.2e-10 67.8 68 50.0
Cre10.g461750 Chlamydomonas reinhardtii HOM05D000572 ORTHO05D002399 1.5e-09 66.2 67 50.7
CSS0045013 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 2.6e-09 65.5 44 72.7
CSS0046519 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 2.6e-09 65.5 44 72.7
CSS0037434 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 7.5e-09 63.9 44 70.5
Medtr3g026190 Medicago truncatula HOM05D000572 ORTHO05D002399 2.2e-08 62.4 32 84.4
SEGI_08948 Sequoiadendron giganteum HOM05D001165 ORTHO05D002399 1.4e-07 59.7 44 61.4
Actinidia01631 Actinidia chinensis HOM05D000572 ORTHO05D002399 5.4e-07 57.8 54 55.6
DCAR_022618 Daucus carota HOM05D000572 ORTHO05D002399 5.4e-07 57.8 47 57.4
vmacro19834 Vaccinium macrocarpon HOM05D000572 ORTHO05D002399 9.2e-07 57.0 66 48.5


User provided reference genes

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