Gene: Cc02_g23510
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc02_g23510
- Transcript Identifier Cc02_g23510.1
- Gene Type Coding gene
- Location chr2 : 20674668-20681302 : positive
Gene Family Information
- ID HOM05D000572
- #Genes/#Species 968/100
- Phylogenetic origin
- ID ORTHO05D002399
- #Genes/#Species 291/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- UniProtKB B1Q3J6
- UniProtKB F6HGK2
- UniProtKB P34881
- UniProtKB Q7Y1I7
- UniProtKB D0V1M9
- UniProtKB D0V1M8
- id GSCOCG00015050001
Descriptions
- Description Putative DNA (cytosine-5)-methyltransferase 1A
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0090116 | IEA | InterPro | C-5 methylation of cytosine | |
| GO:0016458 | ISO | PLAZA Integrative Orthology | gene silencing | Os03g0798300 |
| GO:0006349 | ISO | PLAZA Integrative Orthology | regulation of gene expression by genetic imprinting | Os07g0182900 |
| GO:0055085 | ISO | PLAZA Homology (enrichment) | transmembrane transport | HOM05D000572 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | Os07g0182900 |
| GO:0010424 | ISO | PLAZA Integrative Orthology | DNA methylation on cytosine within a CG sequence | Os07g0182900 |
| GO:0010216 | ISO | PLAZA Integrative Orthology | maintenance of DNA methylation | Os07g0182900 |
| GO:0006821 | ISO | PLAZA Homology (enrichment) | chloride transport | HOM05D000572 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003682 | IEA | InterPro | chromatin binding | |
| GO:0008168 | IEA | InterPro | methyltransferase activity | |
| GO:0003886 | IEA | InterPro | DNA (cytosine-5-)-methyltransferase activity | |
| GO:0005247 | ISO | PLAZA Homology (enrichment) | voltage-gated chloride channel activity | HOM05D000572 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0016020 | ISO | PLAZA Homology (enrichment) | membrane | HOM05D000572 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR022702 | DNA (cytosine-5)-methyltransferase 1, replication foci domain |
| IPR001025 | Bromo adjacent homology (BAH) domain |
| IPR043151 | Bromo adjacent homology (BAH) domain superfamily |
| IPR001525 | C-5 cytosine methyltransferase |
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
| IPR017198 | DNA (cytosine-5)-methyltransferase 1-like |
| Mapman id | Description |
|---|---|
| 12.5.2.2 | Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA methyltransferase (MET) |