Gene: Sopen11g013460

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g013460
  • Transcript Identifier Sopen11g013460.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 20812626-20830641 : negative

Gene Family Information

  • ID HOM05D000572
  • #Genes/#Species 968/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g013460.1

Descriptions

  • Description Encodes a cytosine methyltransferase MET1. Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation. | methyltransferase 1 (MET1) | FUNCTIONS IN: methyltransferase activity | INVOLVED IN: in 6 processes | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 , DNA methylase, C-5 cytosine-specific , Bromo adjacent homology (BAH) domain , DNA methylase, C-5 cytosine-specific, active site | BEST Arabidopsis thaliana protein match is: DNA (cytosine-5-)-methyltransferase family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006821
ISO
PLAZA Homology (enrichment)chloride transport HOM05D000572
GO:0010069
ISO
PLAZA Integrative Orthologyzygote asymmetric cytokinesis in embryo sac AT5G49160
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation AT5G49160
GO:0010424
ISO
PLAZA Integrative OrthologyDNA methylation on cytosine within a CG sequence AT5G49160
GO:0009836
ISO
PLAZA Integrative Orthologyfruit ripening, climacteric Solyc11g030600.3
GO:0006349
ISO
PLAZA Integrative Orthologyregulation of gene expression by genetic imprinting AT5G49160
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT5G49160
GO:0009835
ISO
PLAZA Integrative Orthologyfruit ripening Solyc11g030600.3
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT4G13610
GO:0055085
ISO
PLAZA Homology (enrichment)transmembrane transport HOM05D000572
GO:0009294
ISO
PLAZA Integrative OrthologyDNA mediated transformation AT4G14140
GO:0016458
ISO
PLAZA Integrative Orthologygene silencing Os03g0798300
GO:0090116
IEA
InterProC-5 methylation of cytosine

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G49160
GO:0005247
ISO
PLAZA Homology (enrichment)voltage-gated chloride channel activity HOM05D000572
GO:0008168
IEA
InterPromethyltransferase activity
GO:0003886
IEA
InterProDNA (cytosine-5-)-methyltransferase activity
GO:0003682
IEA
InterProchromatin binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
ISO
PLAZA Homology (enrichment)membrane HOM05D000572
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001525 C-5 cytosine methyltransferase
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR043151 Bromo adjacent homology (BAH) domain superfamily
IPR022702 DNA (cytosine-5)-methyltransferase 1, replication foci domain
IPR001025 Bromo adjacent homology (BAH) domain
IPR017198 DNA (cytosine-5)-methyltransferase 1-like
Mapman id Description
12.5.2.2 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA methyltransferase (MET)