Gene: CSS0042457
General Information
Structural Information
- Species Camellia sinensis var. sinensis
- Gene Identifier CSS0042457
- Transcript Identifier CSS0042457.1
- Gene Type Coding gene
- Location Contig119 : 956-11566 : positive
Gene Family Information
- ID HOM05D000572
- #Genes/#Species 968/100
- Phylogenetic origin
- ID ORTHO05D002399
- #Genes/#Species 291/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid CSS0042457.1
Descriptions
- Description PREDICTED: DNA (cytosine-5)-methyltransferase 1A-like isoform X1 [Nelumbo nucifera]
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006821 | ISO | PLAZA Homology (enrichment) | chloride transport | HOM05D000572 |
| GO:0010069 | ISO | PLAZA Integrative Orthology | zygote asymmetric cytokinesis in embryo sac | AT5G49160 |
| GO:0010216 | ISO | PLAZA Integrative Orthology | maintenance of DNA methylation | AT5G49160 |
| GO:0010424 | ISO | PLAZA Integrative Orthology | DNA methylation on cytosine within a CG sequence | AT5G49160 |
| GO:0009836 | ISO | PLAZA Integrative Orthology | fruit ripening, climacteric | Solyc11g030600.3 |
| GO:0006349 | ISO | PLAZA Integrative Orthology | regulation of gene expression by genetic imprinting | AT5G49160 |
| GO:0009910 | ISO | PLAZA Integrative Orthology | negative regulation of flower development | AT5G49160 |
| GO:0009835 | ISO | PLAZA Integrative Orthology | fruit ripening | Solyc11g030600.3 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT4G13610 |
| GO:0055085 | ISO | PLAZA Homology (enrichment) | transmembrane transport | HOM05D000572 |
| GO:0009294 | ISO | PLAZA Integrative Orthology | DNA mediated transformation | AT4G14140 |
| GO:0016458 | ISO | PLAZA Integrative Orthology | gene silencing | Os03g0798300 |
| GO:0090116 | IEA | InterPro | C-5 methylation of cytosine |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G49160 |
| GO:0005247 | ISO | PLAZA Homology (enrichment) | voltage-gated chloride channel activity | HOM05D000572 |
| GO:0008168 | IEA | InterPro | methyltransferase activity | |
| GO:0003886 | IEA | InterPro | DNA (cytosine-5-)-methyltransferase activity | |
| GO:0003682 | IEA | InterPro | chromatin binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | ISO | PLAZA Homology (enrichment) | membrane | HOM05D000572 |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001525 | C-5 cytosine methyltransferase |
| IPR022702 | DNA (cytosine-5)-methyltransferase 1, replication foci domain |
| IPR001025 | Bromo adjacent homology (BAH) domain |
| IPR043151 | Bromo adjacent homology (BAH) domain superfamily |
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
| IPR017198 | DNA (cytosine-5)-methyltransferase 1-like |
| Mapman id | Description |
|---|---|
| 12.5.2.2 | Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA methyltransferase (MET) |