Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0377681 Rosa chinensis HOM05D002159 ORTHO05D005625 4.9e-238 827.4 414 100.0
FvH4_7g29660 Fragaria vesca HOM05D002159 ORTHO05D005625 9.5e-226 786.6 414 94.9
FAN06G4426 Fragaria x ananassa HOM05D002159 ORTHO05D005625 9.5e-226 786.6 414 94.9
FAN03G1172 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.6e-225 785.8 414 94.7
FAN03G0857 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.2e-225 783.9 414 94.4
FAN06G3579 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.2e-225 783.9 414 94.7
FAN01G0872 Fragaria x ananassa HOM05D002159 ORTHO05D005625 5.4e-221 770.8 420 92.9
FAN10G0118 Fragaria x ananassa HOM05D002159 ORTHO05D005625 4.6e-220 767.7 414 93.2
Prupe.2G296200 Prunus persica HOM05D002159 ORTHO05D005625 9.9e-207 723.4 414 85.7
MD07G1272900 Malus domestica HOM05D002159 ORTHO05D005625 1.1e-205 719.9 415 84.8
MD01G1203600 Malus domestica HOM05D002159 ORTHO05D005625 6.6e-203 710.7 426 83.6
CANSAT21G0489 Cannabis sativa HOM05D002159 ORTHO05D005625 1.4e-200 703.0 417 83.5
Duzib084G0847 Durio zibethinus HOM05D002159 ORTHO05D005625 1.5e-194 682.9 415 81.2
Lj2g0019958 Lotus japonicus HOM05D002159 ORTHO05D005625 9.6e-194 680.2 415 79.8
Ciclev10004414m.g Citrus clementina HOM05D002159 ORTHO05D005625 8.1e-193 677.2 416 80.8
Duzib205G0713 Durio zibethinus HOM05D002159 ORTHO05D005625 3.1e-192 675.2 414 80.2
Ca_14555_v3 Cicer arietinum L. HOM05D002159 ORTHO05D005625 5.3e-192 674.5 415 79.5
QL09p013785 Quercus lobata HOM05D002159 ORTHO05D005625 1.5e-191 672.9 414 80.2
Lalb_Chr03g0034671 Lupinus albus HOM05D002159 ORTHO05D005625 4.5e-191 671.4 415 79.5
Glyma.09G136900 Glycine max HOM05D002159 ORTHO05D005625 7.6e-191 670.6 415 80.2
TWI34G0379 Tripterygium wilfordii HOM05D002159 ORTHO05D005625 7.6e-191 670.6 415 80.2
VMungo0464G2116 Vigna mungo HOM05D002159 ORTHO05D005625 7.6e-191 670.6 415 80.0
Thecc.03G179100 Theobroma cacao HOM05D002159 ORTHO05D005625 1.3e-190 669.8 415 80.0
TAR629G0581 Trochodendron aralioides HOM05D002159 ORTHO05D005625 1.3e-190 669.8 415 79.3
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 2.9e-190 668.7 415 79.8
CSS0044503 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 3.8e-190 668.3 415 79.0
Atru.chr1.430 Acer truncatum HOM05D002159 ORTHO05D005625 8.4e-190 667.2 414 78.7
CSS0008751 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 8.4e-190 667.2 415 78.8
Nn1g01521 Nelumbo nucifera HOM05D002159 ORTHO05D005625 4.2e-189 664.8 415 79.0
TPR.G8152 Trifolium pratense HOM05D002159 ORTHO05D005625 7.1e-189 664.1 415 78.3
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 1.2e-188 663.3 415 79.3
GSVIVG01028919001 Vitis vinifera HOM05D002159 ORTHO05D005625 1.6e-188 662.9 415 78.3
Medtr1g050492 Medicago truncatula HOM05D002159 ORTHO05D005625 2.7e-188 662.1 415 77.1
MELO3C006919.2 Cucumis melo HOM05D002159 ORTHO05D005625 6.0e-188 661.0 415 79.5
Actinidia25881 Actinidia chinensis HOM05D002159 ORTHO05D005625 7.9e-188 660.6 415 78.1
Phvul.004G114000 Phaseolus vulgaris HOM05D002159 ORTHO05D005625 1.0e-187 660.2 415 78.8
CsaV3_3G017220 Cucumis sativus L. HOM05D002159 ORTHO05D005625 8.7e-187 657.1 415 79.0
vmacro06665 Vaccinium macrocarpon HOM05D002159 ORTHO05D005625 8.7e-187 657.1 415 77.8
Rhsim03G0187300 Rhododendron simsii HOM05D002159 ORTHO05D005625 1.5e-186 656.4 414 77.8
Glyma.16G182300 Glycine max HOM05D002159 ORTHO05D005625 2.5e-186 655.6 415 79.3
Manes.01G126800 Manihot esculenta HOM05D002159 ORTHO05D005625 5.7e-186 654.4 414 77.3
Potri.001G231800 Populus trichocarpa HOM05D002159 ORTHO05D005625 5.7e-186 654.4 415 77.8
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 1.3e-185 653.3 415 77.6
DCAR_026334 Daucus carota HOM05D002159 ORTHO05D005625 2.1e-185 652.5 416 77.4
Gohir.A12G256700 Gossypium hirsutum HOM05D002159 ORTHO05D005625 2.1e-185 652.5 415 78.1
PSO478G3748 Papaver somniferum HOM05D002159 ORTHO05D005625 4.8e-185 651.4 415 76.1
HanXRQChr14g0462121 Helianthus annuus HOM05D002159 ORTHO05D005625 1.8e-184 649.4 414 78.5
PSO782G0249 Papaver somniferum HOM05D002159 ORTHO05D005625 3.1e-184 648.7 415 75.9
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 6.9e-184 647.5 430 76.0
THA.LOC104821393 Tarenaya hassleriana HOM05D002159 ORTHO05D005625 2.0e-183 646.0 418 75.6
Cfa023191 Carpinus fangiana HOM05D002159 ORTHO05D005625 5.8e-183 644.4 395 81.0
Gohir.D12G258000 Gossypium hirsutum HOM05D002159 ORTHO05D005625 7.6e-183 644.0 415 77.1
Gorai.008G276300 Gossypium raimondii HOM05D002159 ORTHO05D005625 7.6e-183 644.0 415 77.1
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 1.0e-182 643.7 415 76.9
Cc02_g02790 Coffea canephora HOM05D002159 ORTHO05D005625 2.9e-182 642.1 412 76.7
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 6.5e-182 641.0 415 75.9
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 8.4e-182 640.6 415 75.9
Haze_13669 Corylus avellana HOM05D002159 ORTHO05D005625 1.1e-181 640.2 427 75.6
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.4e-181 639.8 416 76.7
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 2.5e-181 639.0 415 76.9
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 2.5e-181 639.0 420 75.5
Hund04761 Selenicereus undatus HOM05D002159 ORTHO05D005625 9.3e-181 637.1 414 75.1
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 2.1e-180 636.0 420 75.5
Cpa.g.c26789.4 Carica papaya HOM05D002159 ORTHO05D005625 2.7e-180 635.6 393 78.6
arahy.Tifrunner.gnm1.ann1.F9YRCX Arachis hypogaea HOM05D002159 ORTHO05D005625 6.1e-180 634.4 404 77.7
AL6G35190 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 1.1e-178 630.2 416 74.0
Dinv28421 Davidia involucrata HOM05D002159 ORTHO05D005625 9.7e-178 627.1 401 76.6
Thhalv10003707m.g Eutrema salsugineum HOM05D002159 ORTHO05D005625 1.6e-177 626.3 416 73.1
AT5G23880 Arabidopsis thaliana HOM05D002159 ORTHO05D005625 4.8e-177 624.8 416 73.1
Lsat_1_v5_gn_2_132660 Lactuca sativa HOM05D002159 ORTHO05D005625 4.8e-177 624.8 421 76.2
Carub.0006s2160 Capsella rubella HOM05D002159 ORTHO05D005625 6.3e-177 624.4 416 73.3
Sabra16G0139100 Salix brachista HOM05D002159 ORTHO05D005625 6.3e-177 624.4 403 75.9
CARHR189680 Cardamine hirsuta HOM05D002159 ORTHO05D005625 8.2e-177 624.0 416 72.6
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 1.4e-176 623.2 415 72.3
BraA06t26396Z Brassica rapa HOM05D002159 ORTHO05D005625 1.8e-176 622.9 416 73.3
A06p34690 Brassica napus HOM05D002159 ORTHO05D005625 3.1e-176 622.1 416 73.1
AUR62015961 Chenopodium quinoa HOM05D002159 ORTHO05D005625 3.1e-176 622.1 416 74.8
C07p43800 Brassica napus HOM05D002159 ORTHO05D005625 4.1e-176 621.7 416 73.3
BolC7t44909H Brassica oleracea HOM05D002159 ORTHO05D005625 6.9e-176 620.9 416 73.1
Lj8C239G4 Lonicera japonica HOM05D002159 ORTHO05D005625 1.2e-175 620.2 401 77.3
BcaNung05469 Brassica carinata HOM05D002159 ORTHO05D005625 1.5e-175 619.8 416 73.1
Sc13g0008820 Simmondsia chinensis HOM05D002159 ORTHO05D005625 2.0e-175 619.4 414 74.9
EL10Ac3g05612 Beta vulgaris HOM05D002159 ORTHO05D005625 7.7e-175 617.5 414 73.2
ECA238G4262 Erigeron canadensis HOM05D002159 ORTHO05D005625 7.7e-175 617.5 414 75.4
AUR62021167 Chenopodium quinoa HOM05D002159 ORTHO05D005625 1.7e-174 616.3 416 73.8
SGA_v2.0_scaffold10G05332 Striga asiatica HOM05D002159 ORTHO05D005625 1.9e-173 612.8 417 73.1
Aa31LG11G3180 Aethionema arabicum HOM05D002159 ORTHO05D005625 1.0e-171 607.1 445 68.5
Migut.F01111 Erythranthe guttata HOM05D002159 ORTHO05D005625 2.3e-171 605.9 421 72.4
CDE06G0059 Ceratophyllum demersum HOM05D002159 ORTHO05D005625 6.7e-171 604.4 416 74.3
Aqoxy7G00327 Aquilegia oxysepala HOM05D002159 ORTHO05D005625 1.1e-170 603.6 416 73.3
Zm00001eb162800 Zea mays HOM05D002159 ORTHO05D005625 5.7e-170 601.3 415 73.3
Hma1.2p1_1604F.1_g293320 Hydrangea macrophylla HOM05D002159 ORTHO05D005625 1.3e-169 600.1 415 72.0
Os09g0569400 Oryza sativa ssp. japonica HOM05D002159 ORTHO05D005625 7.2e-165 584.3 415 71.6
ATR0680G292 Amborella trichopoda HOM05D002159 ORTHO05D005625 2.0e-162 576.2 418 70.8
HPP92_025730 Vanilla planifolia HOM05D002159 ORTHO05D005625 1.8e-160 569.7 416 69.0
SalBow2G1087 Salvia bowleyana HOM05D002159 ORTHO05D005625 1.9e-157 559.7 400 70.2
HPP92_025733 Vanilla planifolia HOM05D002159 ORTHO05D005625 4.1e-152 542.0 394 69.3
Psat0s1874g0200 Pisum sativum HOM05D002159 ORTHO05D005625 4.8e-145 518.5 348 75.0
Ah.13g068620 Amaranthus hybridus HOM05D002159 ORTHO05D005625 4.4e-138 495.4 380 67.1
unitig_26.g10199 Utricularia gibba HOM05D002159 ORTHO05D005625 3.0e-131 472.6 379 63.1
Mapoly0007s0176 Marchantia polymorpha HOM05D002159 ORTHO05D005625 4.9e-129 465.3 417 57.8
BcaNung05470 Brassica carinata HOM05D002159 ORTHO05D005625 7.0e-128 461.5 296 72.6
COL.COLO4_28056 Corchorus olitorius HOM05D002159 ORTHO05D005625 7.8e-127 458.0 286 80.1
Pp3c9_11100 Physcomitrium patens HOM05D002159 ORTHO05D005625 4.9e-121 438.7 429 55.2
BcaNung01838 Brassica carinata HOM05D002159 ORTHO05D005625 2.7e-119 433.0 389 59.9
AagrBONN_evm.TU.Sc2ySwM_117.3689 Anthoceros agrestis HOM05D002159 ORTHO05D005625 1.5e-117 427.2 431 52.4
SMO111G0062 Selaginella moellendorffii HOM05D002159 ORTHO05D005625 4.0e-115 419.1 414 51.4
Glyma.11G170601 Glycine max HOM05D002159 ORTHO05D005625 6.8e-107 391.7 244 77.5
Actinidia34126 Actinidia chinensis HOM05D002159 ORTHO05D005625 6.0e-103 378.6 245 74.3
Oeu028430.1 Olea europaea HOM05D002159 ORTHO05D005625 3.3e-101 372.9 235 75.7
Psat0s2150g0120 Pisum sativum HOM05D002159 ORTHO05D005625 1.4e-91 340.9 290 63.1
CBR_g4749 Chara braunii HOM05D002159 ORTHO05D005625 1.7e-89 334.0 379 48.8
AL6G35160 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 3.9e-78 296.2 205 73.2
PSO423G0230 Papaver somniferum HOM05D002159 ORTHO05D005625 2.8e-76 290.0 286 56.6
Glyma.11G171003 Glycine max HOM05D002159 ORTHO05D005625 1.6e-71 274.2 175 80.6
FAN06G2653 Fragaria x ananassa HOM05D002159 ORTHO05D005625 7.2e-64 248.8 179 76.5
RcHm_v2.0_Chr1g0378701 Rosa chinensis HOM05D002159 ORTHO05D005625 3.7e-60 236.5 241 59.8
RcHm_v2.0_Chr1g0379161 Rosa chinensis HOM05D002159 ORTHO05D005625 1.1e-56 224.9 198 62.1
HPP92_025761 Vanilla planifolia HOM05D002159 ORTHO05D005625 3.7e-52 209.9 187 62.0
Glyma.11G171002 Glycine max HOM05D002159 ORTHO05D005625 1.3e-49 201.4 115 82.6
FAN18G0300 Fragaria x ananassa HOM05D002159 ORTHO05D005625 7.4e-45 185.7 151 67.5
Actinidia02884 Actinidia chinensis HOM05D002159 ORTHO05D005625 9.7e-45 185.3 129 75.2
FvH4_7g30021 Fragaria vesca HOM05D002159 ORTHO05D017878 1.6e-42 177.9 316 38.9
FAN06G3485 Fragaria x ananassa HOM05D002159 ORTHO05D017878 1.0e-41 175.3 316 38.9
Lj1A1000T74 Lonicera japonica HOM05D002159 ORTHO05D005625 6.7e-38 162.5 117 71.8
PRCOL_00000390 Prasinoderma coloniale HOM05D002159 ORTHO05D005625 1.3e-36 158.3 515 27.8
RcHm_v2.0_Chr1g0379171 Rosa chinensis HOM05D002159 ORTHO05D005625 1.1e-32 145.2 124 68.5
RcHm_v2.0_Chr1g0379341 Rosa chinensis HOM05D002159 ORTHO05D005625 1.1e-32 145.2 124 68.5
MELO3C035667.2 Cucumis melo HOM05D002159 ORTHO05D017878 5.5e-32 142.9 101 66.3
MCO01G234 Micromonas commoda HOM05D002159 ORTHO05D005625 8.8e-30 135.6 482 24.9
MCO01G235 Micromonas commoda HOM05D002159 ORTHO05D005625 8.8e-30 135.6 482 24.9
Haze_26919 Corylus avellana HOM05D002159 ORTHO05D005625 4.4e-29 133.3 285 30.9
COL.COLO4_28055 Corchorus olitorius HOM05D002159 ORTHO05D017878 2.4e-27 127.5 73 79.5
Lj1E1000G1 Lonicera japonica HOM05D002159 ORTHO05D017878 3.2e-24 117.1 72 76.4
MELO3C033916.2 Cucumis melo HOM05D002159 ORTHO05D017878 4.0e-22 110.2 92 59.8
MD01G1203700 Malus domestica HOM05D000507 ORTHO05D000416 5.2e-22 109.8 59 84.7
RcHm_v2.0_Chr1g0379181 Rosa chinensis HOM05D002159 ORTHO05D005625 6.8e-22 109.4 56 94.6
RcHm_v2.0_Chr1g0379351 Rosa chinensis HOM05D002159 ORTHO05D005625 6.8e-22 109.4 56 94.6
FvH4_5g14450 Fragaria vesca HOM05D002159 ORTHO05D005625 3.4e-21 107.1 56 91.1
DCAR_002643 Daucus carota HOM05D002159 ORTHO05D017878 2.4e-19 100.9 72 66.7
SHI10395 Sapria himalayana HOM05D002159 ORTHO05D005625 2.0e-18 97.8 75 57.3
MELO3C034434.2 Cucumis melo HOM05D002159 ORTHO05D017878 2.3e-17 94.4 84 56.0
Cre12.g487600 Chlamydomonas reinhardtii HOM05D002159 ORTHO05D005625 1.5e-16 91.7 582 21.5
SpUn0431_0010 Schrenkiella parvula HOM05D002159 ORTHO05D372157 1.2e-13 82.0 49 81.6
SEGI_18447 Sequoiadendron giganteum HOM05D002159 ORTHO05D017878 3.4e-13 80.5 84 50.0
RcHm_v2.0_Chr1g0379331 Rosa chinensis HOM05D002159 ORTHO05D005625 4.6e-10 70.1 67 58.2
SHI10394 Sapria himalayana HOM05D002159 ORTHO05D005625 1.5e-08 65.1 44 68.2
MD01G1204000 Malus domestica HOM05D000507 ORTHO05D000416 3.3e-08 63.9 34 85.3
Pp3c5_16690 Physcomitrium patens HOM05D002001 ORTHO05D006833 1.8e-06 58.2 109 27.5
Medtr7g089260 Medicago truncatula HOM05D000001 ORTHO05D000003 2.3e-06 57.8 37 67.6


User provided reference genes

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