Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 4.7e-48 194.1 93 100.0
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 6.6e-26 120.6 60 93.3
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 8.6e-26 120.2 88 73.9
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 2.7e-19 98.6 53 84.9
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 1.3e-18 96.3 53 83.0
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.3e-18 96.3 53 83.0
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.3e-18 96.3 53 83.0
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.3e-18 96.3 53 83.0
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 4.7e-16 87.8 53 71.7
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 6.2e-16 87.4 53 73.6
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 8.1e-16 87.0 54 70.4
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 1.1e-15 86.7 53 73.6
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.1e-15 86.7 53 67.9
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 1.1e-15 86.7 53 71.7
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 1.1e-15 86.7 77 55.8
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 1.1e-15 86.7 56 67.9
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 1.1e-15 86.7 53 71.7
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 1.4e-15 86.3 53 69.8
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 1.4e-15 86.3 51 70.6
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.4e-15 86.3 53 67.9
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.4e-15 86.3 53 67.9
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 2.4e-15 85.5 53 67.9
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 2.4e-15 85.5 53 69.8
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 3.1e-15 85.1 53 71.7
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 3.1e-15 85.1 51 72.5
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 5.2e-15 84.3 53 67.9
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 5.2e-15 84.3 51 72.5
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 5.2e-15 84.3 51 72.5
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 5.2e-15 84.3 50 76.0
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 8.9e-15 83.6 51 68.6
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 8.9e-15 83.6 51 72.5
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 8.9e-15 83.6 53 67.9
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 1.2e-14 83.2 52 71.2
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 1.5e-14 82.8 51 70.6
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 1.5e-14 82.8 53 66.0
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 1.5e-14 82.8 53 66.0
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 2.0e-14 82.4 53 64.2
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 2.0e-14 82.4 51 68.6
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.0e-14 82.4 52 69.2
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.0e-14 82.4 52 69.2
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.6e-14 82.0 51 70.6
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 2.6e-14 82.0 49 73.5
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 3.4e-14 81.6 51 66.7
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 4.4e-14 81.3 51 68.6
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 4.4e-14 81.3 51 70.6
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 5.8e-14 80.9 51 66.7
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 7.6e-14 80.5 51 68.6
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 7.6e-14 80.5 48 70.8
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 7.6e-14 80.5 50 70.0
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 9.9e-14 80.1 50 70.0
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 9.9e-14 80.1 52 69.2
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.3e-13 79.7 54 63.0
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 2.2e-13 79.0 50 66.0
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 2.2e-13 79.0 53 64.2
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 2.2e-13 79.0 50 66.0
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 2.2e-13 79.0 53 64.2
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.2e-13 79.0 50 70.0
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 2.2e-13 79.0 51 68.6
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 2.2e-13 79.0 53 64.2
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 2.9e-13 78.6 49 69.4
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 2.9e-13 78.6 76 50.0
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 2.9e-13 78.6 50 66.0
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 2.9e-13 78.6 51 68.6
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 3.8e-13 78.2 50 64.0
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 4.9e-13 77.8 65 52.3
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 4.9e-13 77.8 51 66.7
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 8.4e-13 77.0 51 58.8
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 8.4e-13 77.0 50 64.0
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 1.1e-12 76.6 48 68.8
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 1.1e-12 76.6 51 66.7
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 1.4e-12 76.3 50 62.0
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.9e-12 75.9 53 60.4
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 1.9e-12 75.9 53 62.3
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.4e-12 75.5 48 66.7
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 2.4e-12 75.5 49 63.3
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 2.4e-12 75.5 49 63.3
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 2.4e-12 75.5 49 63.3
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 2.4e-12 75.5 49 63.3
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 2.4e-12 75.5 49 63.3
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 2.4e-12 75.5 49 63.3
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 2.4e-12 75.5 49 65.3
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 2.4e-12 75.5 51 58.8
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 2.4e-12 75.5 53 58.5
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 3.2e-12 75.1 47 68.1
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 3.2e-12 75.1 51 62.7
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 3.2e-12 75.1 47 68.1
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 3.2e-12 75.1 51 64.7
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 3.2e-12 75.1 48 66.7
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 3.2e-12 75.1 53 58.5
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 4.2e-12 74.7 51 56.9
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 4.2e-12 74.7 51 56.9
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 5.4e-12 74.3 51 60.8
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 7.1e-12 73.9 53 56.6
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 2.7e-11 72.0 48 60.4
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 2.7e-11 72.0 53 54.7
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 3.5e-11 71.6 49 63.3
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 3.5e-11 71.6 53 56.6
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 4.6e-11 71.2 51 62.7
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 6.0e-11 70.9 54 57.4
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 6.0e-11 70.9 54 57.4
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 7.8e-11 70.5 51 60.8
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.8e-11 70.5 44 70.5
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 3.0e-10 68.6 51 58.8
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 3.0e-10 68.6 61 55.7
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 3.3e-09 65.1 62 46.8
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 7.3e-09 63.9 62 46.8
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 1.6e-08 62.8 51 51.0
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 3.6e-08 61.6 67 44.8
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 2.6e-06 55.5 61 50.8


User provided reference genes

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