Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0349891 Rosa chinensis HOM05D001546 ORTHO05D008648 1.4e-78 296.2 150 100.0
RcHm_v2.0_Chr1g0349941 Rosa chinensis HOM05D001546 ORTHO05D008648 5.1e-60 234.6 123 95.9
FvH4_7g11500 Fragaria vesca HOM05D001546 ORTHO05D008648 5.4e-54 214.5 123 87.0
FAN06G1243 Fragaria x ananassa HOM05D001546 ORTHO05D002908 2.7e-53 212.2 123 86.2
FAN06G5055 Fragaria x ananassa HOM05D001546 ORTHO05D002908 2.7e-53 212.2 123 86.2
FAN10G0988 Fragaria x ananassa HOM05D001546 ORTHO05D002908 2.7e-53 212.2 123 86.2
FAN10G0703 Fragaria x ananassa HOM05D001546 ORTHO05D002908 1.3e-52 209.9 123 85.4
Prupe.2G143400 Prunus persica HOM05D001546 ORTHO05D008648 4.0e-49 198.4 123 80.5
MD07G1119400 Malus domestica HOM05D001546 ORTHO05D008648 3.8e-47 191.8 123 76.4
FAN03G2056 Fragaria x ananassa HOM05D001546 ORTHO05D008648 2.4e-46 189.1 127 78.0
CiPaw.01G263600 Carya illinoinensis HOM05D001546 ORTHO05D008648 7.1e-46 187.6 123 74.8
TWI14G0061 Tripterygium wilfordii HOM05D001546 ORTHO05D008648 3.0e-44 182.2 123 74.0
Atru.chr5.288 Acer truncatum HOM05D001546 ORTHO05D008648 3.3e-43 178.7 123 73.2
GSVIVG01027665001 Vitis vinifera HOM05D001546 ORTHO05D008648 5.6e-43 177.9 123 72.4
ClCG05G002360 Citrullus lanatus HOM05D001546 ORTHO05D008648 2.1e-42 176.0 123 68.3
CsaV3_3G009800 Cucumis sativus L. HOM05D001546 ORTHO05D008648 4.8e-42 174.9 123 69.1
Oeu005800.1 Olea europaea HOM05D001546 ORTHO05D008648 1.1e-41 173.7 124 72.6
Rhsim07G0028900 Rhododendron simsii HOM05D001546 ORTHO05D008648 1.8e-41 172.9 123 72.4
MELO3C006201.2 Cucumis melo HOM05D001546 ORTHO05D008648 2.4e-41 172.6 123 68.3
vmacro13415 Vaccinium macrocarpon HOM05D001546 ORTHO05D008648 4.0e-41 171.8 123 73.2
Actinidia12247 Actinidia chinensis HOM05D001546 ORTHO05D008648 6.9e-41 171.0 123 71.5
ECA236G2516 Erigeron canadensis HOM05D001546 ORTHO05D008648 6.9e-41 171.0 123 69.9
CSS0003206 Camellia sinensis var. sinensis HOM05D001546 ORTHO05D008648 2.0e-40 169.5 123 72.4
CSS0048837 Camellia sinensis var. sinensis HOM05D001546 ORTHO05D008648 2.0e-40 169.5 123 72.4
HanXRQChr16g0532481 Helianthus annuus HOM05D001546 ORTHO05D008648 5.8e-40 167.9 123 69.9
Nitab4.5_0003912g0060 Nicotiana tabacum HOM05D001546 ORTHO05D008648 5.8e-40 167.9 123 69.1
Sed0028009 Sechium edule HOM05D001546 ORTHO05D008648 7.6e-40 167.5 123 66.7
Gohir.D08G156500 Gossypium hirsutum HOM05D001546 ORTHO05D008648 1.3e-39 166.8 123 70.7
Cpa.g.sc18.103 Carica papaya HOM05D001546 ORTHO05D008648 1.7e-39 166.4 123 64.2
Solyc05g050950.2 Solanum lycopersicum HOM05D001546 ORTHO05D008648 1.7e-39 166.4 123 67.5
Sopen05g029430 Solanum pennellii HOM05D001546 ORTHO05D008648 1.7e-39 166.4 123 67.5
SalBow5G5288 Salvia bowleyana HOM05D001546 ORTHO05D008648 2.9e-39 165.6 124 69.4
MSTRG.20739 Avicennia marina HOM05D001546 ORTHO05D008648 4.9e-39 164.9 126 69.8
Gohir.A08G135700 Gossypium hirsutum HOM05D001546 ORTHO05D008648 4.9e-39 164.9 123 69.9
PGSC0003DMG400007020 Solanum tuberosum HOM05D001546 ORTHO05D008648 6.4e-39 164.5 123 66.7
Duzib138G0139 Durio zibethinus HOM05D001546 ORTHO05D002908 8.4e-39 164.1 125 69.6
BcaC02g12229 Brassica carinata HOM05D001546 ORTHO05D008648 1.1e-38 163.7 121 66.9
Cc02_g24070 Coffea canephora HOM05D001546 ORTHO05D008648 1.1e-38 163.7 124 69.4
Carub.0004s2788 Capsella rubella HOM05D001546 ORTHO05D008648 1.9e-38 162.9 123 65.0
BcaB02g08944 Brassica carinata HOM05D001546 ORTHO05D002908 3.2e-38 162.2 124 64.5
Migut.B01619 Erythranthe guttata HOM05D001546 ORTHO05D008648 4.2e-38 161.8 124 66.9
SGA_v2.0_scaffold95G28909 Striga asiatica HOM05D001546 ORTHO05D008648 9.3e-38 160.6 124 68.5
AL4G44380 Arabidopsis lyrata HOM05D001546 ORTHO05D008648 2.1e-37 159.5 123 62.6
A05p05300 Brassica napus HOM05D001546 ORTHO05D008648 2.1e-37 159.5 126 65.1
BraA05t19499Z Brassica rapa HOM05D001546 ORTHO05D008648 2.1e-37 159.5 126 65.1
PSO782G0784 Papaver somniferum HOM05D001546 ORTHO05D008648 2.1e-37 159.5 123 65.0
Thecc.01G378800 Theobroma cacao HOM05D001546 ORTHO05D008648 2.1e-37 159.5 125 68.8
Aqoxy7G00663 Aquilegia oxysepala HOM05D001546 ORTHO05D008648 4.6e-37 158.3 126 64.3
PGR042G0240 Punica granatum HOM05D001546 ORTHO05D008648 6.0e-37 157.9 123 66.7
C04p06210 Brassica napus HOM05D001546 ORTHO05D008648 1.0e-36 157.1 133 61.7
CARHR140490 Cardamine hirsuta HOM05D001546 ORTHO05D008648 1.0e-36 157.1 123 61.8
DCAR_031520 Daucus carota HOM05D001546 ORTHO05D008648 1.0e-36 157.1 123 66.7
Eucgr.I00435 Eucalyptus grandis HOM05D001546 ORTHO05D008648 1.0e-36 157.1 123 65.0
AT2G45280 Arabidopsis thaliana HOM05D001546 ORTHO05D008648 2.3e-36 156.0 123 63.4
Ca_19947_v3 Cicer arietinum L. HOM05D001546 ORTHO05D008648 2.3e-36 156.0 124 62.9
CANSAT56G2954 Cannabis sativa HOM05D001546 ORTHO05D008648 3.0e-36 155.6 129 65.1
CANSAT56G4308 Cannabis sativa HOM05D001546 ORTHO05D008648 3.0e-36 155.6 129 65.1
Nn1g01135 Nelumbo nucifera HOM05D001546 ORTHO05D008648 3.0e-36 155.6 123 66.7
PSO832G0911 Papaver somniferum HOM05D001546 ORTHO05D008648 3.9e-36 155.2 123 63.4
Thhalv10001529m.g Eutrema salsugineum HOM05D001546 ORTHO05D008648 6.7e-36 154.5 122 61.5
Lsat_1_v5_gn_7_9580 Lactuca sativa HOM05D001546 ORTHO05D008648 6.7e-36 154.5 123 64.2
THA.LOC104817238 Tarenaya hassleriana HOM05D001546 ORTHO05D008648 6.7e-36 154.5 124 62.9
TPR.G31325 Trifolium pratense HOM05D001546 ORTHO05D008648 6.7e-36 154.5 124 62.1
Sp4g27300 Schrenkiella parvula HOM05D001546 ORTHO05D008648 1.5e-35 153.3 123 60.2
SpUn0031_0020 Schrenkiella parvula HOM05D001546 ORTHO05D008648 1.5e-35 153.3 123 60.2
Lalb_Chr07g0189931 Lupinus albus HOM05D001546 ORTHO05D008648 7.4e-35 151.0 125 65.6
Medtr4g024850 Medicago truncatula HOM05D001546 ORTHO05D008648 7.4e-35 151.0 124 61.3
Phvul.010G082100 Phaseolus vulgaris HOM05D001546 ORTHO05D008648 7.4e-35 151.0 124 61.3
Thhalv10001556m.g Eutrema salsugineum HOM05D001546 ORTHO05D008648 9.6e-35 150.6 132 58.3
Ciclev10021754m.g Citrus clementina HOM05D001546 ORTHO05D008648 1.3e-34 150.2 125 64.8
VMungo0331G1707 Vigna mungo HOM05D001546 ORTHO05D008648 1.3e-34 150.2 124 61.3
Medtr4g111780 Medicago truncatula HOM05D001546 ORTHO05D008648 1.6e-34 149.8 124 60.5
Psat7g230880 Pisum sativum HOM05D001546 ORTHO05D008648 1.6e-34 149.8 124 60.5
Gorai.004G162800 Gossypium raimondii HOM05D001546 ORTHO05D008648 2.1e-34 149.4 154 55.8
arahy.Tifrunner.gnm1.ann1.Y484AZ Arachis hypogaea HOM05D001546 ORTHO05D008648 2.8e-34 149.1 125 61.6
MD02G1207000 Malus domestica HOM05D001546 ORTHO05D008648 3.7e-34 148.7 109 70.6
Hund17030 Selenicereus undatus HOM05D001546 ORTHO05D008648 4.8e-34 148.3 123 65.9
arahy.Tifrunner.gnm1.ann1.ZAG0TB Arachis hypogaea HOM05D001546 ORTHO05D008648 1.1e-33 147.1 125 60.8
Lj3g0018034 Lotus japonicus HOM05D001546 ORTHO05D008648 1.8e-33 146.4 125 60.8
arahy.Tifrunner.gnm1.ann1.KRWE0T Arachis hypogaea HOM05D001546 ORTHO05D008648 2.4e-33 146.0 126 60.3
EL10Ac1g00872 Beta vulgaris HOM05D001546 ORTHO05D008648 3.1e-33 145.6 123 62.6
QL08p052789 Quercus lobata HOM05D001546 ORTHO05D008648 5.3e-33 144.8 162 51.2
Dinv43692 Davidia involucrata HOM05D001546 ORTHO05D008648 4.5e-32 141.7 123 64.2
ATR0757G033 Amborella trichopoda HOM05D001546 ORTHO05D008648 5.8e-32 141.4 123 60.2
Sc23g0003690 Simmondsia chinensis HOM05D001546 ORTHO05D008648 7.6e-32 141.0 123 58.5
Nitab4.5_0001329g0130 Nicotiana tabacum HOM05D001546 ORTHO05D008648 2.2e-31 139.4 176 48.9
AUR62013651 Chenopodium quinoa HOM05D001546 ORTHO05D002908 6.4e-31 137.9 123 58.5
AUR62004193 Chenopodium quinoa HOM05D001546 ORTHO05D008648 1.9e-30 136.3 123 57.7
SEGI_35236 Sequoiadendron giganteum HOM05D001546 ORTHO05D008648 2.4e-30 136.0 125 56.0
Os01g0578000 Oryza sativa ssp. japonica HOM05D001546 ORTHO05D008648 6.0e-29 131.3 126 54.0
Aa31LG1G26810 Aethionema arabicum HOM05D001546 ORTHO05D008648 1.0e-28 130.6 144 52.1
C04p48920 Brassica napus HOM05D001546 ORTHO05D008648 6.7e-28 127.9 100 63.0
HPP92_018406 Vanilla planifolia HOM05D001546 ORTHO05D008648 8.7e-28 127.5 123 51.2
Peaxi162Scf00959g00125 Petunia axillaris HOM05D001546 ORTHO05D008648 2.5e-27 125.9 88 70.5
Lj7A531T53 Lonicera japonica HOM05D001546 ORTHO05D008648 7.4e-27 124.4 86 70.9
unitig_0.g1301 Utricularia gibba HOM05D001546 ORTHO05D008648 2.1e-26 122.9 112 56.2
Ah.05g176670 Amaranthus hybridus HOM05D001546 ORTHO05D008648 1.4e-25 120.2 178 41.0
Glyma.03G027600 Glycine max HOM05D001546 ORTHO05D008648 1.2e-24 117.1 124 53.2
Manes.11G109100 Manihot esculenta HOM05D001546 ORTHO05D008648 1.7e-23 113.2 87 64.4
CDE04G0759 Ceratophyllum demersum HOM05D001546 ORTHO05D008648 9.3e-22 107.5 123 48.8
COL.COLO4_12526 Corchorus olitorius HOM05D005501 ORTHO05D007485 1.2e-21 107.1 89 64.0
Mapoly0114s0015 Marchantia polymorpha HOM05D001546 ORTHO05D008648 3.5e-21 105.5 127 49.6
MBI12_g20322_MAGBIO Magnolia biondii HOM05D001546 ORTHO05D008648 1.4e-17 93.6 74 63.5
arahy.Tifrunner.gnm1.ann1.6GCE7S Arachis hypogaea HOM05D001546 ORTHO05D008648 2.4e-17 92.8 61 68.9
Potri.014G068100 Populus trichocarpa HOM05D001546 ORTHO05D008648 6.9e-17 91.3 52 80.8
CBR_g29371 Chara braunii HOM05D001546 ORTHO05D008648 9.0e-17 90.9 123 43.1
Duzib133G1401 Durio zibethinus HOM05D001546 ORTHO05D008648 2.0e-16 89.7 55 74.5
CAN.G295.12 Capsicum annuum HOM05D001546 ORTHO05D008648 2.6e-16 89.4 52 76.9
Pp3c5_12400 Physcomitrium patens HOM05D001546 ORTHO05D008648 4.5e-16 88.6 122 41.8
TAR375G1132 Trochodendron aralioides HOM05D001546 ORTHO05D008648 1.9e-14 83.2 71 57.7
PRCOL_00003537 Prasinoderma coloniale HOM05D001546 ORTHO05D008648 2.7e-13 79.3 154 31.8
MCO01G368 Micromonas commoda HOM05D001363 ORTHO05D008648 7.9e-13 77.8 122 38.5
Cre02.g102500 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D008648 3.9e-12 75.5 124 37.9
BolC4t22246H Brassica oleracea HOM05D003075 ORTHO05D003430 2.8e-10 69.3 87 48.3
BcaB02g10315 Brassica carinata HOM05D001546 ORTHO05D008648 4.8e-10 68.6 72 51.4
AagrBONN_evm.TU.Sc2ySwM_228.594 Anthoceros agrestis HOM05D001546 ORTHO05D008648 1.4e-09 67.0 51 58.8


User provided reference genes

Program Settings