Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 3.3e-136 488.4 251 100.0
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 3.9e-89 332.0 403 55.3
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 1.0e-57 227.6 383 42.8
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.4e-57 227.3 385 42.9
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 4.5e-53 212.2 396 41.7
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 3.2e-51 206.1 393 42.2
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.0e-49 201.1 415 40.2
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 3.0e-49 199.5 404 38.6
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-48 197.6 390 39.2
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.5e-48 197.2 395 39.0
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.3e-48 196.1 388 39.2
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 4.4e-48 195.7 409 39.1
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 4.8e-47 192.2 390 38.7
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.8e-47 192.2 397 39.3
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 6.3e-47 191.8 353 38.2
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 4.1e-46 189.1 409 35.2
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 5.3e-46 188.7 407 38.6
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.2e-45 187.6 402 37.8
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.6e-45 187.2 395 37.7
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 2.0e-45 186.8 406 37.4
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 2.0e-45 186.8 392 37.8
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 2.0e-45 186.8 410 37.8
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.0e-44 184.5 342 38.3
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 2.2e-44 183.3 404 37.9
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.9e-44 183.0 407 38.1
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.9e-44 183.0 334 41.0
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 3.8e-44 182.6 395 37.7
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.8e-44 182.6 418 35.4
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 8.5e-44 181.4 373 38.9
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.5e-43 180.6 408 37.0
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.2e-43 179.5 353 39.4
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 3.2e-43 179.5 406 37.7
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 7.2e-43 178.3 340 38.2
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 9.4e-43 177.9 336 41.1
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 1.6e-42 177.2 388 36.3
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.6e-42 177.2 401 36.2
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 8.0e-42 174.9 360 38.3
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 8.0e-42 174.9 311 39.5
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 4.0e-41 172.6 414 35.3
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 5.2e-41 172.2 347 38.6
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 6.7e-41 171.8 278 40.6
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 8.8e-41 171.4 382 39.3
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.1e-40 171.0 344 36.6
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.1e-40 171.0 407 34.9
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 2.6e-40 169.9 318 40.6
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 4.4e-40 169.1 365 37.3
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 4.4e-40 169.1 341 37.0
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 5.7e-40 168.7 414 32.4
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 9.7e-40 167.9 402 36.6
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 9.7e-40 167.9 413 35.4
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.3e-39 167.5 410 35.4
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.7e-39 167.2 311 38.9
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 2.8e-39 166.4 396 35.9
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 4.8e-39 165.6 414 33.1
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 6.3e-39 165.2 310 38.7
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 6.3e-39 165.2 356 36.2
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.1e-38 164.5 341 37.5
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.4e-38 164.1 356 37.1
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 3.1e-38 162.9 332 36.4
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 3.1e-38 162.9 350 38.9
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 3.1e-38 162.9 366 36.6
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 4.1e-38 162.5 321 38.0
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 5.3e-38 162.2 333 36.9
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 5.3e-38 162.2 330 34.8
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 5.3e-38 162.2 307 37.1
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 5.3e-38 162.2 307 37.1
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 7.0e-38 161.8 354 37.9
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 9.1e-38 161.4 345 37.1
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.2e-37 161.0 333 36.9
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.2e-37 161.0 354 36.4
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 1.2e-37 161.0 390 36.7
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 2.0e-37 160.2 317 37.5
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 2.7e-37 159.8 350 37.4
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.7e-37 159.8 412 35.4
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 3.5e-37 159.5 332 34.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 7.7e-37 158.3 351 36.8
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 7.7e-37 158.3 349 38.1
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 1.0e-36 157.9 307 36.8
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.3e-36 157.5 307 36.8
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.3e-36 157.5 307 36.8
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.7e-36 157.1 332 35.2
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 2.2e-36 156.8 346 36.4
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 2.2e-36 156.8 390 36.2
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 2.2e-36 156.8 339 35.1
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.2e-36 156.8 351 37.0
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 5.0e-36 155.6 390 35.6
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 8.5e-36 154.8 389 36.8
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.5e-35 154.1 308 37.0
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.5e-35 154.1 321 35.5
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.9e-35 153.7 389 36.0
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 5.5e-35 152.1 388 34.8
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 9.4e-35 151.4 294 37.1
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 9.4e-35 151.4 418 32.3
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 1.2e-34 151.0 340 36.8
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 2.1e-34 150.2 398 34.2
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.7e-34 149.1 328 34.5
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.7e-34 149.1 328 34.5
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.4e-33 147.5 410 32.9
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 3.0e-33 146.4 403 32.8
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.0e-33 146.4 313 33.5
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 4.0e-33 146.0 411 33.1
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 6.8e-33 145.2 398 31.7
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 8.8e-33 144.8 264 40.2
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.5e-32 144.1 411 32.8
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.3e-31 141.0 96 66.7
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.7e-31 140.6 89 78.7
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.4e-30 137.5 350 35.7
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 4.1e-30 136.0 398 32.4
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 5.4e-30 135.6 90 68.9
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 9.1e-30 134.8 319 32.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 8.5e-28 128.3 346 33.5
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 9.4e-27 124.8 259 36.7
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.6e-26 124.0 407 31.4
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.6e-26 124.0 404 31.2
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.1e-26 123.6 304 31.9
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 4.7e-26 122.5 306 33.7
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 8.0e-26 121.7 272 34.6
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.2e-24 117.9 320 31.6
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 2.0e-24 117.1 319 32.0
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.1e-22 111.3 89 59.6
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.1e-22 111.3 363 30.6
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 5.4e-22 109.0 180 42.2
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.0e-20 104.8 205 44.4
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 2.3e-17 93.6 320 31.2
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.0e-17 93.2 211 39.3
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.8e-16 88.2 188 41.5
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.8e-16 88.2 188 41.5
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.8e-14 84.0 66 68.2
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 5.9e-13 79.0 90 47.8
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 5.6e-11 72.4 90 44.4
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.6e-10 70.9 86 40.7
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.1e-10 70.5 197 34.5
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 2.6e-08 63.5 82 43.9
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 5.8e-08 62.4 38 73.7
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 9.8e-08 61.6 222 29.7
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 2.2e-07 60.5 127 37.8
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 3.7e-07 59.7 132 40.2
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 8.3e-07 58.5 43 65.1
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 2.4e-06 57.0 97 36.1


User provided reference genes

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