Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 2.1e-107 392.5 218 100.0
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 4.3e-36 155.6 194 51.0
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 5.0e-32 142.1 196 46.4
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.9e-31 140.2 199 45.7
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 9.4e-31 137.9 194 45.9
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 1.1e-28 131.0 198 43.9
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 5.7e-28 128.6 193 43.0
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 1.3e-27 127.5 198 43.4
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 2.2e-27 126.7 193 42.5
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 4.8e-27 125.6 197 43.1
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 4.8e-27 125.6 188 43.1
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 6.3e-27 125.2 196 40.3
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 6.3e-27 125.2 196 40.8
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.4e-26 124.0 197 40.6
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.4e-26 124.0 189 43.9
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.8e-26 123.6 191 40.8
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 2.4e-26 123.2 188 42.6
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.4e-26 123.2 190 41.1
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 3.1e-26 122.9 195 40.5
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 3.1e-26 122.9 193 40.4
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.1e-26 122.5 198 42.9
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.1e-26 122.5 198 42.9
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 5.3e-26 122.1 196 41.3
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 6.9e-26 121.7 192 41.1
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 6.9e-26 121.7 195 41.0
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 9.1e-26 121.3 196 41.3
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 3.4e-25 119.4 195 40.0
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 5.9e-25 118.6 195 40.5
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 5.9e-25 118.6 195 40.5
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 7.7e-25 118.2 195 40.5
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 7.7e-25 118.2 196 40.3
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.3e-24 117.5 196 41.3
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 1.3e-24 117.5 186 41.4
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.3e-24 117.5 196 38.8
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 1.3e-24 117.5 196 39.8
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 5.0e-24 115.5 196 39.3
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 6.5e-24 115.2 195 40.0
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 6.5e-24 115.2 195 39.0
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 1.1e-23 114.4 197 41.1
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 1.4e-23 114.0 195 41.0
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 1.4e-23 114.0 188 39.4
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 5.5e-23 112.1 200 39.5
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 7.2e-23 111.7 197 40.1
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 7.2e-23 111.7 197 40.1
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 7.2e-23 111.7 195 39.5
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 9.4e-23 111.3 193 40.4
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.4e-23 111.3 197 39.6
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 1.6e-22 110.5 197 39.6
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.6e-22 110.5 197 39.6
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 2.1e-22 110.2 181 38.1
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 3.6e-22 109.4 188 41.0
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 6.1e-22 108.6 196 38.3
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.0e-21 107.8 196 38.8
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.0e-21 107.8 194 38.1
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.8e-21 107.1 188 40.4
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.8e-21 107.1 178 40.4
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 2.3e-21 106.7 192 38.0
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 3.0e-21 106.3 177 39.5
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 3.9e-21 105.9 189 41.8
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 5.2e-21 105.5 205 37.1
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 8.8e-21 104.8 191 38.7
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 1.1e-20 104.4 192 39.1
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.1e-20 104.4 197 37.1
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.1e-20 104.4 193 37.8
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.0e-20 103.6 194 39.2
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.4e-20 102.4 188 39.4
QL11p001610 Quercus lobata HOM05D000032 ORTHO05D007397 4.4e-20 102.4 56 91.1
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 5.7e-20 102.1 188 39.4
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 9.7e-20 101.3 195 38.5
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 1.3e-19 100.9 189 38.6
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.3e-19 100.9 197 38.1
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.3e-19 100.9 194 36.6
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 1.3e-19 100.9 185 35.7
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.7e-19 100.5 190 37.4
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.7e-19 100.5 195 38.5
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 2.2e-19 100.1 185 38.4
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 2.8e-19 99.8 195 37.4
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 2.8e-19 99.8 194 36.6
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 2.8e-19 99.8 194 36.6
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 3.7e-19 99.4 189 36.5
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 3.7e-19 99.4 191 36.1
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 3.7e-19 99.4 185 37.8
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 3.7e-19 99.4 70 78.6
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 4.8e-19 99.0 186 38.7
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 4.8e-19 99.0 195 36.4
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 6.3e-19 98.6 191 35.6
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 6.3e-19 98.6 191 36.6
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 8.2e-19 98.2 190 36.3
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.4e-18 97.4 198 37.9
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.4e-18 97.4 188 37.8
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.8e-18 97.1 190 36.3
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 1.8e-18 97.1 188 39.4
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 1.8e-18 97.1 195 35.9
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 4.1e-18 95.9 190 36.3
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 5.3e-18 95.5 189 36.0
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 5.3e-18 95.5 197 36.0
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 5.3e-18 95.5 184 37.5
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 7.0e-18 95.1 176 36.9
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 7.0e-18 95.1 194 35.1
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 7.0e-18 95.1 186 37.6
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 9.1e-18 94.7 149 41.6
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 9.1e-18 94.7 198 36.9
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 9.1e-18 94.7 188 37.2
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 9.1e-18 94.7 188 37.8
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 9.1e-18 94.7 188 37.2
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.6e-17 94.0 190 35.8
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 3.5e-17 92.8 188 37.2
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 3.5e-17 92.8 187 35.8
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.9e-17 92.0 191 35.6
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 5.9e-17 92.0 72 66.7
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.0e-16 91.3 183 37.2
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.3e-16 90.9 188 36.7
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 1.3e-16 90.9 195 33.8
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 2.2e-16 90.1 151 37.7
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 3.8e-16 89.4 191 33.5
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 5.0e-16 89.0 191 33.5
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 5.0e-16 89.0 192 35.4
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 6.5e-16 88.6 80 60.0
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 6.5e-16 88.6 188 34.0
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 1.1e-15 87.8 190 34.2
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 3.2e-15 86.3 145 39.3
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 3.2e-15 86.3 79 57.0
CiPaw.03G202900 Carya illinoinensis HOM05D000032 ORTHO05D007397 1.8e-13 80.5 56 73.2
Cfa002956 Carpinus fangiana HOM05D000032 ORTHO05D007397 3.0e-13 79.7 56 75.0
Haze_26046 Corylus avellana HOM05D000032 ORTHO05D007397 4.0e-13 79.3 56 75.0
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 8.8e-13 78.2 171 35.1
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.5e-12 77.4 170 34.1
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.5e-12 77.4 80 55.0
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 1.5e-12 77.4 101 45.5
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.7e-12 75.5 125 36.8
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 5.7e-12 75.5 80 53.8
TAR624G0111 Trochodendron aralioides HOM05D000032 ORTHO05D007397 3.7e-11 72.8 55 63.6
Dinv25527 Davidia involucrata HOM05D000032 ORTHO05D007397 4.8e-11 72.4 60 56.7
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.0e-09 67.0 125 35.2
Atru.BG.251.p Acer truncatum HOM05D000032 ORTHO05D007397 4.5e-09 65.9 56 58.9
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 5.9e-09 65.5 80 46.2
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 5.9e-09 65.5 143 29.4
Manes.17G108000 Manihot esculenta HOM05D000032 ORTHO05D007397 1.3e-08 64.3 56 55.4
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 3.8e-08 62.8 190 28.4
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.8e-08 62.8 95 40.0
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 3.8e-08 62.8 80 46.2
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 3.8e-08 62.8 80 46.2
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 6.5e-08 62.0 133 33.1
CSS0001786 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007397 8.5e-08 61.6 56 55.4
CSS0040690 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007397 8.5e-08 61.6 56 55.4
GSVIVG01015034001 Vitis vinifera HOM05D000032 ORTHO05D007397 8.5e-08 61.6 55 52.7
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 2.5e-07 60.1 48 58.3
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 2.5e-07 60.1 48 58.3
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 2.5e-07 60.1 48 58.3
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 2.5e-07 60.1 48 58.3
Gohir.A05G402500 Gossypium hirsutum HOM05D000032 ORTHO05D007397 2.5e-07 60.1 56 51.8
Gohir.D04G013000 Gossypium hirsutum HOM05D000032 ORTHO05D007397 2.5e-07 60.1 56 51.8
Gorai.012G015300 Gossypium raimondii HOM05D000032 ORTHO05D007397 2.5e-07 60.1 56 51.8
Ciclev10031043m.g Citrus clementina HOM05D000032 ORTHO05D007397 5.5e-07 58.9 56 51.8
Lj7A690G50 Lonicera japonica HOM05D000032 ORTHO05D007397 5.5e-07 58.9 56 51.8
Eucgr.C03292 Eucalyptus grandis HOM05D000032 ORTHO05D007397 1.2e-06 57.8 56 51.8
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 1.6e-06 57.4 48 54.2
Rhsim05G0004000 Rhododendron simsii HOM05D000032 ORTHO05D007397 1.6e-06 57.4 56 51.8
Ciclev10032266m.g Citrus clementina HOM05D000032 ORTHO05D007397 4.7e-06 55.8 55 50.9
Actinidia39632 Actinidia chinensis HOM05D000032 ORTHO05D007397 6.1e-06 55.5 56 51.8
Thecc.10G177300 Theobroma cacao HOM05D000032 ORTHO05D007397 6.1e-06 55.5 56 51.8
Cpa.g.sc19.50 Carica papaya HOM05D000032 ORTHO05D007397 8.0e-06 55.1 56 50.0
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 8.0e-06 55.1 80 42.5
vmacro17100 Vaccinium macrocarpon HOM05D000032 ORTHO05D007397 8.0e-06 55.1 56 50.0


User provided reference genes

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