Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p005073 Quercus lobata HOM05D005620 ORTHO05D002193 4.8e-166 587.8 307 100.0
Haze_19751 Corylus avellana HOM05D005620 ORTHO05D002193 3.9e-99 365.5 318 64.2
CiPaw.09G042300 Carya illinoinensis HOM05D005620 ORTHO05D002193 9.9e-95 350.9 312 62.5
Cfa016753 Carpinus fangiana HOM05D005620 ORTHO05D002193 4.8e-81 305.4 272 62.1
TWI53G0502 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 9.3e-69 264.6 308 50.0
TWI53G0092 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 6.7e-67 258.5 309 49.2
Atru.chr1.1154_Atru.chr1.1155 Acer truncatum HOM05D005620 ORTHO05D002193 3.4e-63 246.1 295 49.2
Nn7g36440 Nelumbo nucifera HOM05D005620 ORTHO05D002193 3.2e-61 239.6 294 47.3
arahy.Tifrunner.gnm1.ann1.K8ZQW4 Arachis hypogaea HOM05D005620 ORTHO05D002193 9.4e-61 238.0 311 49.2
Lj5g0010383 Lotus japonicus HOM05D005620 ORTHO05D002193 1.2e-60 237.7 308 46.4
TAR636G3531 Trochodendron aralioides HOM05D005620 ORTHO05D002193 1.0e-59 234.6 296 49.3
Glyma.10G105800 Glycine max HOM05D005620 ORTHO05D002193 3.0e-59 233.0 289 46.7
Phvul.007G249300 Phaseolus vulgaris HOM05D005620 ORTHO05D002193 1.1e-58 231.1 271 49.1
Sabra16G0047700 Salix brachista HOM05D005620 ORTHO05D002193 1.1e-58 231.1 303 47.9
Glyma.02G191100 Glycine max HOM05D005620 ORTHO05D002193 4.8e-57 225.7 271 48.0
MD12G1086000 Malus domestica HOM05D005620 ORTHO05D002193 4.8e-57 225.7 246 52.0
arahy.Tifrunner.gnm1.ann1.VNMU4U Arachis hypogaea HOM05D005620 ORTHO05D002193 4.1e-56 222.6 318 46.9
GSVIVG01033553001 Vitis vinifera HOM05D005620 ORTHO05D002193 4.1e-56 222.6 301 44.5
Dinv30296 Davidia involucrata HOM05D005620 ORTHO05D002193 5.3e-56 222.2 295 46.8
Medtr1g051380 Medicago truncatula HOM05D005620 ORTHO05D002193 5.3e-56 222.2 274 48.5
Lalb_Chr02g0156421 Lupinus albus HOM05D005620 ORTHO05D002193 1.7e-54 217.2 304 45.1
CSS0011392 Camellia sinensis var. sinensis HOM05D005620 ORTHO05D002193 2.2e-54 216.9 241 53.1
Prupe.7G050000 Prunus persica HOM05D005620 ORTHO05D002193 5.0e-54 215.7 245 49.0
Thecc.05G145200 Theobroma cacao HOM05D005620 ORTHO05D002193 1.1e-53 214.5 309 44.3
Thecc.K0006600 Theobroma cacao HOM05D005620 ORTHO05D002193 1.1e-53 214.5 309 44.3
Psat6g118160 Pisum sativum HOM05D005620 ORTHO05D002193 7.2e-53 211.8 275 49.1
Ca_25788_v3 Cicer arietinum L. HOM05D005620 ORTHO05D002193 1.2e-52 211.1 313 45.0
COL.COLO4_21299 Corchorus olitorius HOM05D005620 ORTHO05D002193 2.1e-52 210.3 280 47.9
Duzib128G2038 Durio zibethinus HOM05D005620 ORTHO05D002193 4.7e-52 209.1 312 43.9
Potri.016G042000 Populus trichocarpa HOM05D005620 ORTHO05D002193 1.4e-51 207.6 269 49.1
CANSAT80G0759 Cannabis sativa HOM05D005620 ORTHO05D002193 2.2e-49 200.3 305 46.2
Actinidia09295 Actinidia chinensis HOM05D005620 ORTHO05D002193 4.8e-49 199.1 230 53.5
FAN05G4287 Fragaria x ananassa HOM05D005620 ORTHO05D002193 7.0e-48 195.3 241 48.5
FvH4_6g24881 Fragaria vesca HOM05D005620 ORTHO05D002193 1.6e-47 194.1 220 50.0
CANSAT80G0060 Cannabis sativa HOM05D005620 ORTHO05D002193 2.0e-47 193.7 305 45.6
Eucgr.K01579 Eucalyptus grandis HOM05D005620 ORTHO05D002193 2.6e-47 193.4 273 45.4
Manes.09G016000 Manihot esculenta HOM05D005620 ORTHO05D002193 5.9e-47 192.2 269 47.6
RcHm_v2.0_Chr3g0484531 Rosa chinensis HOM05D005620 ORTHO05D002193 7.2e-45 185.3 215 49.3
Gohir.D03G074900 Gossypium hirsutum HOM05D005620 ORTHO05D002193 1.0e-43 181.4 309 39.2
Gorai.003G086400 Gossypium raimondii HOM05D005620 ORTHO05D002193 2.3e-43 180.3 309 39.2
Sc19g0008380 Simmondsia chinensis HOM05D005620 ORTHO05D002193 6.7e-43 178.7 304 37.2
Gohir.A02G123602 Gossypium hirsutum HOM05D005620 ORTHO05D002193 2.2e-41 173.7 308 37.7
Sopen04g008610 Solanum pennellii HOM05D005620 ORTHO05D002193 3.1e-40 169.9 313 37.1
vmacro21954 Vaccinium macrocarpon HOM05D005620 ORTHO05D002193 4.1e-40 169.5 263 41.8
CsaV3_3G040940 Cucumis sativus L. HOM05D005620 ORTHO05D002193 7.0e-40 168.7 295 39.0
Solyc04g016530.3 Solanum lycopersicum HOM05D005620 ORTHO05D002193 7.0e-40 168.7 314 36.6
AUR62026123 Chenopodium quinoa HOM05D005620 ORTHO05D002193 1.6e-39 167.5 246 41.5
Sed0006254 Sechium edule HOM05D005620 ORTHO05D002193 2.7e-39 166.8 217 46.1
PGSC0003DMG403012723 Solanum tuberosum HOM05D005620 ORTHO05D002193 7.7e-39 165.2 235 41.7
EL10Ac3g07159 Beta vulgaris HOM05D005620 ORTHO05D002193 1.3e-38 164.5 248 41.9
Hma1.2p1_0056F.1_g031590 Hydrangea macrophylla HOM05D005620 ORTHO05D002193 1.3e-38 164.5 274 41.2
Migut.K00117 Erythranthe guttata HOM05D005620 ORTHO05D002193 1.5e-37 161.0 224 43.3
ClCG10G015520 Citrullus lanatus HOM05D005620 ORTHO05D002193 2.5e-37 160.2 331 36.6
THA.LOC104803289 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 2.5e-37 160.2 311 38.6
BcaB01g03467 Brassica carinata HOM05D005620 ORTHO05D002193 1.6e-36 157.5 309 35.3
Thhalv10016487m.g Eutrema salsugineum HOM05D005620 ORTHO05D002193 2.1e-36 157.1 312 35.9
AT2G41460 Arabidopsis thaliana HOM05D005620 ORTHO05D002193 6.1e-36 155.6 311 36.7
MELO3C009829.2 Cucumis melo HOM05D005620 ORTHO05D002193 6.1e-36 155.6 270 38.1
Sp4g23730 Schrenkiella parvula HOM05D005620 ORTHO05D002193 1.0e-35 154.8 309 35.9
Carub.0004s2376 Capsella rubella HOM05D005620 ORTHO05D002193 2.3e-35 153.7 318 34.9
AL4G39540 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 4.0e-35 152.9 326 36.8
CAN.G1237.2 Capsicum annuum HOM05D005620 ORTHO05D002193 5.2e-35 152.5 321 35.2
AUR62024530 Chenopodium quinoa HOM05D005620 ORTHO05D002193 6.8e-35 152.1 241 40.2
Aqoxy1G00331 Aquilegia oxysepala HOM05D005620 ORTHO05D002193 1.7e-33 147.5 208 41.3
Peaxi162Scf00130g01016 Petunia axillaris HOM05D005620 ORTHO05D002193 1.7e-33 147.5 235 39.1
Cc06_g18370 Coffea canephora HOM05D005620 ORTHO05D002193 6.3e-33 145.6 291 36.8
Lsat_1_v5_gn_9_32000 Lactuca sativa HOM05D005620 ORTHO05D002193 8.3e-33 145.2 214 46.7
MBI19_g08310_MAGBIO Magnolia biondii HOM05D005620 ORTHO05D002193 1.1e-32 144.8 194 44.8
CARHR136580 Cardamine hirsuta HOM05D005620 ORTHO05D002193 1.4e-32 144.4 316 36.7
HPP92_016888 Vanilla planifolia HOM05D005620 ORTHO05D002193 1.6e-31 141.0 286 34.3
C03p27780 Brassica napus HOM05D005620 ORTHO05D002193 2.0e-31 140.6 316 32.9
PSO339G1912 Papaver somniferum HOM05D005620 ORTHO05D002193 7.7e-31 138.7 298 37.9
Ciclev10005831m.g Citrus clementina HOM05D005620 ORTHO05D002193 1.3e-30 137.9 241 43.6
Cpa.g.sc120.9 Carica papaya HOM05D005620 ORTHO05D002193 3.8e-30 136.3 147 53.7
DCAR_019171 Daucus carota HOM05D005620 ORTHO05D002193 1.9e-29 134.0 211 39.8
Nitab4.5_0000826g0250 Nicotiana tabacum HOM05D005620 ORTHO05D002193 4.2e-29 132.9 194 37.6
A03p23280 Brassica napus HOM05D005620 ORTHO05D002193 5.5e-29 132.5 336 31.2
Aqoxy5G03576 Aquilegia oxysepala HOM05D005620 ORTHO05D002193 7.2e-29 132.1 201 39.8
BcaC01g05336 Brassica carinata HOM05D005620 ORTHO05D002193 3.6e-28 129.8 233 36.1
CDE07G1402 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 4.7e-28 129.4 283 33.9
HanXRQChr10g0298661 Helianthus annuus HOM05D005620 ORTHO05D002193 3.0e-27 126.7 206 39.8
Aa31LG1G23480 Aethionema arabicum HOM05D005620 ORTHO05D002193 5.2e-27 125.9 266 34.2
CDE04G0757 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 8.8e-27 125.2 246 35.4
SGA_v2.0_scaffold94G28513 Striga asiatica HOM05D005620 ORTHO05D002193 1.5e-26 124.4 269 34.9
ECA247G2062 Erigeron canadensis HOM05D005620 ORTHO05D002193 6.3e-25 119.0 240 35.4
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 1.2e-23 114.8 324 32.1
BraA03t11547Z Brassica rapa HOM05D005620 ORTHO05D002193 1.6e-23 114.4 333 30.3
Hund19124 Selenicereus undatus HOM05D005620 ORTHO05D002193 2.0e-23 114.0 242 35.1
BolC3t15148H Brassica oleracea HOM05D005620 ORTHO05D002193 3.5e-23 113.2 287 31.7
Os01g0801000 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 3.5e-23 113.2 289 29.8
Sc13g0001490 Simmondsia chinensis HOM05D005620 ORTHO05D002193 3.5e-23 113.2 118 58.5
Nitab4.5_0001618g0310 Nicotiana tabacum HOM05D005620 ORTHO05D002193 1.7e-22 110.9 174 39.1
Lj2A390T38 Lonicera japonica HOM05D005620 ORTHO05D002193 3.8e-22 109.8 81 67.9
ATR0733G075 Amborella trichopoda HOM05D005620 ORTHO05D002193 6.6e-22 109.0 271 32.5
Oeu023137.3 Olea europaea HOM05D005620 ORTHO05D002193 4.3e-21 106.3 199 38.2
MSTRG.10802 Avicennia marina HOM05D005620 ORTHO05D002193 5.6e-21 105.9 157 38.2
Ciclev10005485m.g Citrus clementina HOM05D005620 ORTHO05D002193 1.2e-20 104.8 61 75.4
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 2.0e-18 97.4 317 29.7
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 4.4e-18 96.3 236 30.9
Pp3c14_3710 Physcomitrium patens HOM05D005620 ORTHO05D002193 2.0e-15 87.4 217 33.6
CAN.G1442.1 Capsicum annuum HOM05D005620 ORTHO05D002193 2.7e-15 87.0 88 47.7
SHI24582 Sapria himalayana HOM05D005620 ORTHO05D002193 2.7e-15 87.0 128 43.0
Mapoly0057s0088 Marchantia polymorpha HOM05D005620 ORTHO05D002193 1.0e-14 85.1 302 26.8
BcaC06g34961 Brassica carinata HOM05D005620 ORTHO05D002193 3.9e-14 83.2 49 71.4
BolC6t36428H Brassica oleracea HOM05D005620 ORTHO05D002193 8.6e-14 82.0 162 33.3
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 1.5e-13 81.3 160 34.4
DCAR_019347 Daucus carota HOM05D005620 ORTHO05D002193 2.5e-13 80.5 49 65.3
COL.COLO4_33915 Corchorus olitorius HOM05D005620 ORTHO05D002193 4.3e-13 79.7 68 57.4
SEGI_06428 Sequoiadendron giganteum HOM05D005620 ORTHO05D002193 4.3e-13 79.7 328 27.4
Os01g0801100 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 2.6e-10 70.5 45 60.0
AagrBONN_evm.TU.Sc2ySwM_369.93 Anthoceros agrestis HOM05D005620 ORTHO05D002193 9.8e-10 68.6 254 27.2
SMO145G0259 Selaginella moellendorffii HOM05D005620 ORTHO05D002193 4.9e-09 66.2 46 58.7
vmacro03183 Vaccinium macrocarpon HOM05D033709 ORTHO05D002193 6.6e-06 55.8 112 36.6
AL4G39920 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 8.6e-06 55.5 162 29.0


User provided reference genes

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