Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1919.8 962 100.0
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1684.8 972 87.6
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1681.4 969 87.7
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1676.4 969 88.2
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1639.8 973 86.0
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1637.9 965 86.1
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1635.9 965 86.0
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1631.7 965 85.7
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1629.4 973 84.9
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1622.8 973 84.8
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1621.7 961 85.3
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1617.1 969 84.7
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1612.4 977 84.0
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1600.9 942 85.8
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1599.3 974 83.7
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1599.3 964 84.0
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1598.6 975 82.7
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1597.8 964 84.4
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1597.0 960 84.0
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1594.7 977 82.2
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1592.0 967 84.2
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1585.9 961 83.9
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1584.7 961 83.8
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1581.2 974 81.6
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1580.8 965 83.3
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1579.7 962 84.2
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1578.9 961 83.6
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1576.2 962 82.6
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1575.5 968 82.7
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 950 83.3
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1573.5 961 83.1
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1571.2 966 82.9
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1570.1 975 81.1
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1567.7 973 81.8
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1565.8 961 82.7
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1565.1 974 80.9
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1564.7 971 80.8
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1564.7 971 81.2
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1561.2 973 81.8
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1561.2 973 81.8
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1559.3 977 80.6
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1559.3 971 80.6
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1558.1 972 80.6
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1556.6 971 80.5
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1555.8 972 80.7
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1553.5 971 80.6
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1552.3 974 81.4
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1551.6 978 80.2
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1548.9 955 81.3
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1543.1 1008 79.0
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1535.0 977 80.8
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1533.1 982 79.2
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1532.3 962 80.1
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 976 79.5
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 971 79.2
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1528.1 961 80.7
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1524.2 968 80.0
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1523.8 965 80.5
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1523.5 954 80.0
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1520.0 968 79.6
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1518.1 968 78.7
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1517.7 951 80.4
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1516.9 970 79.5
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1511.5 969 78.9
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1509.2 970 79.2
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1508.8 970 79.4
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1507.7 951 80.3
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1505.3 970 78.7
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1505.0 957 78.7
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 956 79.0
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1504.6 956 79.0
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1502.3 964 79.5
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1501.5 955 78.3
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1500.3 965 78.4
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1499.6 956 77.9
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1498.8 956 78.5
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1498.4 959 79.0
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1497.6 954 78.6
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1497.3 957 78.0
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1496.9 957 78.1
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1496.9 957 78.1
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1496.9 955 78.1
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1494.2 969 78.7
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1491.5 955 77.8
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1489.9 960 78.3
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1488.8 957 77.5
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1487.2 957 77.7
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1487.2 947 78.8
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1486.9 970 79.0
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1484.9 951 78.9
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1484.2 980 78.9
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1483.8 983 76.7
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1483.4 978 78.8
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1483.0 950 78.0
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1482.2 951 78.5
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 965 77.6
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1475.3 970 76.7
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1471.4 961 77.4
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 968 76.0
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1439.9 968 75.6
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1413.3 845 85.3
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1406.7 959 72.5
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1402.5 968 74.0
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1401.7 957 72.0
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1352.0 948 71.7
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1320.8 852 78.8
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1313.1 977 68.6
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1311.6 961 71.9
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1303.1 859 76.9
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1255.7 742 83.6
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1213.4 974 67.1
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1177.9 700 83.4
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1167.5 977 60.6
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1154.8 1011 58.8
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1092.4 947 59.8
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1089.3 1036 55.0
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 4.6e-311 1071.2 675 80.7
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 4.7e-308 1061.2 659 81.8
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 7.5e-282 974.2 691 69.5
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 1.6e-228 797.0 763 53.7
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 5.1e-206 722.2 477 76.7
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.4e-187 660.2 440 73.0
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.5e-117 426.8 317 67.2
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 3.3e-112 410.6 1317 25.7
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 2.2e-108 397.9 638 39.0
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 8.5e-76 289.7 209 72.7
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 1.4e-73 282.3 213 66.7
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.2e-61 242.7 181 68.5
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 5.0e-52 210.7 304 42.1
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 3.3e-51 208.0 122 84.4
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 1.6e-45 189.1 131 74.0
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 7.5e-40 170.2 139 64.0
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 9.2e-38 163.3 106 68.9
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.6e-29 136.0 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 2.0e-16 92.4 80 62.5
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 3.2e-06 58.5 45 66.7


User provided reference genes

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