Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 0.0e+00 1312.4 667 100.0
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 1.0e-293 1013.1 672 78.7
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 1.7e-285 985.7 671 74.8
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 8.0e-275 950.3 777 68.0
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 3.8e-248 861.7 672 67.1
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 1.6e-246 856.3 695 65.3
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 3.9e-237 825.1 672 65.9
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 4.3e-236 821.6 666 66.2
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 6.2e-235 817.8 674 65.6
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 1.5e-233 813.1 669 65.3
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 2.9e-232 808.9 682 64.5
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 8.4e-232 807.4 674 65.1
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 8.7e-229 797.3 663 62.3
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 1.2e-225 786.9 670 62.1
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 1.7e-224 783.1 672 61.8
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 3.8e-224 781.9 679 62.4
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 1.2e-222 776.9 735 59.6
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 8.7e-221 770.8 558 71.7
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 2.8e-219 765.8 670 61.5
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 2.4e-218 762.7 672 59.8
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 4.1e-218 761.9 674 61.9
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 2.6e-217 759.2 558 71.0
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 2.9e-216 755.7 654 62.8
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 5.5e-215 751.5 669 61.0
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 8.7e-213 744.2 671 59.8
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 4.3e-212 741.9 671 59.8
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 2.8e-211 739.2 624 61.9
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 8.2e-211 737.6 673 60.2
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 4.1e-210 735.3 670 59.4
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 2.6e-209 732.6 671 59.3
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 4.2e-207 725.3 657 59.8
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 1.0e-205 720.7 656 58.8
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 4.3e-204 715.3 625 60.5
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 1.7e-203 713.4 663 57.2
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 2.6e-201 706.1 672 58.6
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 3.4e-201 705.7 615 60.2
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 3.4e-201 705.7 673 58.5
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 1.3e-200 703.7 684 57.6
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 1.3e-200 703.7 649 57.8
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 1.2e-198 697.2 602 61.3
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 4.7e-198 695.3 666 56.6
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 6.1e-198 694.9 671 56.0
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 7.9e-198 694.5 589 61.5
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 3.0e-197 692.6 596 60.2
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 9.7e-196 687.6 668 55.7
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 3.1e-194 682.6 605 59.3
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 4.5e-193 678.7 665 54.4
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 1.7e-192 676.8 617 59.0
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 2.9e-192 676.0 669 54.1
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 2.9e-192 676.0 625 58.2
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 1.8e-189 666.8 674 55.9
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 1.8e-189 666.8 669 54.4
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 1.8e-189 666.8 668 54.9
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 9.7e-188 661.0 580 62.1
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 2.2e-187 659.8 669 54.7
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 6.3e-187 658.3 678 54.1
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 2.4e-186 656.4 605 58.7
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 3.1e-186 656.0 669 54.0
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 1.2e-185 654.1 676 53.1
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 2.0e-185 653.3 682 52.8
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 1.5e-183 647.1 665 53.8
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 4.2e-183 645.6 682 53.2
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 6.1e-182 641.7 559 60.1
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 1.0e-181 641.0 656 53.4
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 2.3e-181 639.8 680 53.1
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 4.0e-181 639.0 616 55.2
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 1.5e-180 637.1 679 52.7
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 2.0e-180 636.7 614 54.6
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 1.3e-179 634.0 680 52.1
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 3.7e-179 632.5 674 51.5
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 3.1e-178 629.4 673 51.6
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 4.1e-178 629.0 667 52.8
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 4.1e-178 629.0 679 52.0
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 1.6e-177 627.1 616 54.1
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 1.7e-176 623.6 619 53.6
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 1.7e-176 623.6 615 54.6
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 1.8e-173 613.6 607 55.2
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 6.8e-173 611.7 679 51.7
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 4.4e-172 609.0 636 53.8
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 1.2e-169 600.9 486 66.5
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 2.9e-168 596.3 607 53.9
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 6.8e-165 585.1 678 49.4
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 1.9e-146 523.9 608 48.4
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 6.0e-145 518.8 689 45.0
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 3.3e-143 513.1 616 45.5
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 3.0e-128 463.4 459 56.2
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 3.8e-115 419.9 571 44.5
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 4.9e-107 392.9 359 57.4
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 2.5e-106 390.6 428 53.7
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 1.0e-104 385.2 687 37.1
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 1.3e-96 358.2 543 37.9
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 3.3e-79 300.4 676 30.8
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 3.3e-79 300.4 545 35.2
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 2.2e-75 287.7 298 52.7
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 2.9e-75 287.3 438 41.3
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 2.7e-73 280.8 531 34.3
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 5.7e-55 219.9 208 51.0
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 3.3e-42 177.6 177 50.8
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 1.1e-37 162.5 128 64.1
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 4.1e-37 160.6 128 64.1
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 5.6e-34 150.2 122 54.9
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 1.2e-23 115.9 226 33.2
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 3.4e-23 114.4 155 40.6
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 2.2e-22 111.7 439 22.1
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 2.7e-20 104.8 211 32.2
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 8.6e-19 99.8 83 50.6
THA.LOC104798460 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 4.0e-16 90.9 127 42.5
Haze_26176 Corylus avellana HOM05D003927 ORTHO05D004905 2.1e-09 68.6 222 24.8
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 2.6e-07 61.6 206 23.3
Sed0013384 Sechium edule HOM05D003927 ORTHO05D004905 2.6e-07 61.6 212 23.1
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 3.4e-07 61.2 253 22.1
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 3.4e-07 61.2 219 21.5
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 5.8e-07 60.5 218 22.5
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 7.6e-07 60.1 259 22.0
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 1.3e-06 59.3 222 22.1
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 2.9e-06 58.2 209 22.5
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 2.9e-06 58.2 206 22.8
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 2.9e-06 58.2 253 21.3
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 2.9e-06 58.2 253 21.3
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 3.8e-06 57.8 205 21.5
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 3.8e-06 57.8 253 21.3
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 4.9e-06 57.4 269 19.3
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 4.9e-06 57.4 184 22.8
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 4.9e-06 57.4 208 21.6
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 6.4e-06 57.0 253 21.7
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 6.4e-06 57.0 214 23.4


User provided reference genes

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