Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 2.3e-77 292.4 168 100.0
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 1.1e-47 193.7 129 87.6
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 5.3e-42 174.9 128 71.9
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 9.4e-39 164.1 128 68.8
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 1.6e-38 163.3 128 68.0
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 3.8e-32 142.1 128 60.9
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 7.2e-31 137.9 128 60.2
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 2.7e-30 136.0 135 57.0
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 3.6e-30 135.6 128 57.8
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 3.6e-30 135.6 129 59.7
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 6.1e-30 134.8 128 58.6
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 6.1e-30 134.8 128 58.6
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 8.0e-30 134.4 128 57.0
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 4.0e-29 132.1 128 59.4
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 8.8e-29 131.0 129 57.4
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 1.2e-28 130.6 129 53.5
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 1.2e-28 130.6 135 55.6
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 2.6e-28 129.4 128 53.1
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 3.4e-28 129.0 153 51.6
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 3.4e-28 129.0 128 57.0
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 3.4e-28 129.0 128 56.2
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 5.7e-28 128.3 128 53.9
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 7.5e-28 127.9 128 52.3
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 7.5e-28 127.9 128 52.3
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 7.5e-28 127.9 128 52.3
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 7.5e-28 127.9 128 56.2
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 9.8e-28 127.5 134 54.5
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 1.3e-27 127.1 128 54.7
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 1.7e-27 126.7 128 53.1
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 2.8e-27 125.9 128 55.5
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 2.8e-27 125.9 129 54.3
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 4.8e-27 125.2 127 54.3
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 6.3e-27 124.8 128 52.3
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 8.3e-27 124.4 128 52.3
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 8.3e-27 124.4 128 52.3
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 1.1e-26 124.0 128 53.9
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 2.4e-26 122.9 131 55.0
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 2.4e-26 122.9 131 55.7
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 7.0e-26 121.3 127 54.3
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 7.0e-26 121.3 127 54.3
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 9.1e-26 120.9 128 50.8
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 1.6e-25 120.2 128 52.3
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 2.7e-25 119.4 144 48.6
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 2.7e-25 119.4 128 54.7
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 3.5e-25 119.0 134 51.5
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 3.5e-25 119.0 128 50.8
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 5.9e-25 118.2 128 51.6
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 1.3e-24 117.1 130 51.5
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 1.3e-24 117.1 130 51.5
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 1.7e-24 116.7 128 48.4
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 2.2e-24 116.3 136 50.7
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 2.9e-24 115.9 131 51.1
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 2.9e-24 115.9 128 51.6
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 6.5e-24 114.8 129 49.6
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 6.5e-24 114.8 129 49.6
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 1.1e-23 114.0 128 50.8
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 2.5e-23 112.8 129 49.6
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 2.5e-23 112.8 128 52.3
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 2.5e-23 112.8 129 50.4
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 2.5e-23 112.8 79 97.5
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 5.5e-23 111.7 128 49.2
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 7.2e-23 111.3 128 50.0
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 9.4e-23 110.9 127 51.2
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 2.1e-22 109.8 127 49.6
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 2.7e-22 109.4 136 47.8
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 2.7e-22 109.4 128 46.9
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 3.6e-22 109.0 127 49.6
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 3.6e-22 109.0 136 47.8
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 4.7e-22 108.6 127 47.2
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 4.7e-22 108.6 136 47.8
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 6.1e-22 108.2 128 50.8
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 8.0e-22 107.8 139 43.9
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 8.0e-22 107.8 139 42.4
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 1.4e-21 107.1 128 49.2
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 1.4e-21 107.1 128 48.4
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 1.8e-21 106.7 139 43.9
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 4.0e-21 105.5 131 48.9
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 4.0e-21 105.5 136 46.3
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 4.0e-21 105.5 127 48.8
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 4.0e-21 105.5 140 47.1
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 6.8e-21 104.8 128 47.7
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 1.2e-20 104.0 127 47.2
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 1.5e-20 103.6 139 41.7
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.5e-20 103.6 128 49.2
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 2.0e-20 103.2 128 46.9
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 3.4e-20 102.4 139 41.0
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 5.7e-20 101.7 128 47.7
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 5.7e-20 101.7 128 49.2
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 5.7e-20 101.7 128 49.2
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 9.8e-20 100.9 127 44.1
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 9.8e-20 100.9 139 41.0
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 9.8e-20 100.9 139 41.0
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 9.8e-20 100.9 139 41.0
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 9.8e-20 100.9 149 44.3
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 1.3e-19 100.5 128 46.9
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 1.7e-19 100.1 139 41.0
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 1.7e-19 100.1 139 41.0
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 1.4e-18 97.1 129 43.4
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 1.4e-18 97.1 129 43.4
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 1.6e-17 93.6 129 42.6
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 1.6e-17 93.6 129 43.4
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 7.7e-17 91.3 145 39.3
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 2.9e-16 89.4 127 41.7
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 2.5e-15 86.3 120 42.5
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 2.1e-14 83.2 119 44.5
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 2.8e-14 82.8 132 38.6
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 1.0e-13 80.9 140 38.6
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 2.9e-11 72.8 123 39.0
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 2.0e-09 66.6 120 35.8
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 4.3e-07 58.9 120 39.2
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 5.6e-07 58.5 115 37.4
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 1.6e-06 57.0 71 43.7


User provided reference genes

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