Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 0.0e+00 2010.7 1012 100.0
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 0.0e+00 1620.9 977 83.3
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 0.0e+00 1599.3 1031 79.5
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 0.0e+00 1362.4 1026 69.2
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 0.0e+00 1345.5 970 72.3
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 0.0e+00 1322.8 1021 68.2
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 0.0e+00 1313.9 1031 68.5
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1298.5 1000 68.3
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1297.3 1007 67.6
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 0.0e+00 1297.0 1009 69.3
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 0.0e+00 1293.5 999 68.4
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1291.9 1013 68.0
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 0.0e+00 1291.2 1013 68.0
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1287.3 999 68.2
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1285.8 1010 67.6
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 0.0e+00 1284.6 956 69.4
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1283.1 971 68.9
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1278.8 973 67.1
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 0.0e+00 1276.9 1012 66.0
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1275.8 973 67.1
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1274.6 1014 67.1
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 0.0e+00 1273.1 1012 67.4
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 0.0e+00 1273.1 969 69.2
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1268.4 970 66.9
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 0.0e+00 1267.3 949 69.1
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 0.0e+00 1263.8 989 66.0
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1248.4 970 66.2
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 0.0e+00 1245.7 1000 66.3
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 0.0e+00 1245.3 1008 66.5
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 0.0e+00 1242.3 1021 64.8
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 0.0e+00 1239.6 990 65.3
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 0.0e+00 1230.3 970 65.6
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 0.0e+00 1229.5 909 69.7
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1229.2 966 68.1
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 0.0e+00 1200.3 960 66.4
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 0.0e+00 1193.3 988 64.3
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 0.0e+00 1176.8 942 64.2
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 0.0e+00 1155.6 1006 61.2
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 0.0e+00 1154.4 950 63.3
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 0.0e+00 1146.7 895 67.9
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 0.0e+00 1142.9 949 65.5
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 0.0e+00 1136.7 1020 61.2
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 0.0e+00 1133.6 1039 60.4
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 0.0e+00 1132.1 972 61.9
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 0.0e+00 1131.3 1004 60.0
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 0.0e+00 1117.4 1000 59.9
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 0.0e+00 1113.6 998 60.0
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 0.0e+00 1113.6 1005 60.3
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 0.0e+00 1110.5 997 60.1
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 0.0e+00 1108.2 998 59.7
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 0.0e+00 1104.0 1000 59.6
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 0.0e+00 1103.6 1045 59.1
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 0.0e+00 1098.6 1002 59.1
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 0.0e+00 1096.3 909 65.1
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 0.0e+00 1095.1 849 69.0
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 0.0e+00 1094.3 1003 59.0
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 0.0e+00 1092.8 717 78.1
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 0.0e+00 1091.3 1000 59.4
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 0.0e+00 1089.7 1004 59.0
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 0.0e+00 1086.2 1014 58.3
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 0.0e+00 1081.6 1001 58.6
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 2.4e-310 1068.9 980 60.7
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 4.6e-306 1054.7 801 70.9
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 2.6e-301 1038.9 1038 55.5
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 1.5e-296 1023.1 1011 56.9
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 2.4e-278 962.6 839 63.4
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 1.1e-275 953.7 1014 52.9
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 3.1e-270 935.6 961 55.9
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 4.1e-270 935.3 986 55.3
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 6.9e-270 934.5 978 55.9
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 1.7e-268 929.9 785 61.8
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 1.9e-267 926.4 1013 51.4
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 5.5e-267 924.9 833 62.3
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 1.2e-266 923.7 728 68.4
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 8.8e-265 917.5 772 63.3
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 1.5e-261 906.7 747 66.8
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 2.2e-260 902.9 908 55.8
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 9.4e-259 897.5 754 65.9
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 6.1e-258 894.8 967 53.9
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 1.0e-257 894.0 834 61.5
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 2.4e-254 882.9 938 54.7
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 3.1e-254 882.5 690 66.8
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 1.0e-252 877.5 844 58.9
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 1.7e-252 876.7 911 54.4
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 1.7e-252 876.7 845 58.9
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 1.9e-251 873.2 913 55.9
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 3.2e-251 872.5 601 75.4
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 3.6e-250 869.0 730 63.6
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 6.7e-249 864.8 917 55.3
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 7.4e-248 861.3 843 58.1
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 2.2e-247 859.8 946 53.1
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 4.8e-247 858.6 857 57.8
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.8e-241 840.1 999 49.7
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 2.5e-235 819.7 1034 49.9
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 1.0e-225 787.7 692 61.8
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.2e-216 757.7 1026 46.8
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 7.0e-214 748.4 803 52.3
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 5.0e-212 742.3 957 48.7
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 1.4e-206 724.2 727 55.6
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 2.6e-200 703.4 731 56.0
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 1.5e-195 687.6 1055 43.1
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 1.3e-172 611.3 714 51.7
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 8.7e-172 608.6 927 40.0
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 6.4e-167 592.4 1106 38.4
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 2.7e-165 587.0 637 53.7
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 4.8e-154 549.7 937 37.6
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 2.2e-151 540.8 729 43.1
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 5.9e-128 463.0 567 47.1
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 6.1e-109 399.8 424 56.4
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.6e-64 252.3 579 34.4
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 6.0e-64 250.4 217 59.4
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 7.6e-51 206.8 347 34.6
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 1.3e-47 196.1 197 58.9
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 7.2e-41 173.7 335 34.0
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.7e-26 125.9 276 33.0
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 3.3e-22 111.7 86 68.6
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 1.7e-21 109.4 123 49.6
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 4.1e-20 104.8 74 70.3
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 1.6e-19 102.8 104 47.1
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 1.2e-16 93.2 72 55.6
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-15 88.6 275 28.7
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-15 87.8 102 49.0
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 1.5e-14 86.3 71 63.4
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 1.0e-10 73.6 41 90.2
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 4.2e-09 68.2 38 89.5
Oeu055170.1 Olea europaea HOM05D003809 ORTHO05D003935 9.4e-09 67.0 119 30.3
TWI74G0880 Tripterygium wilfordii HOM05D003809 ORTHO05D003935 2.1e-08 65.9 111 27.9
Actinidia20726 Actinidia chinensis HOM05D003809 ORTHO05D003935 8.8e-07 60.5 104 26.9
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 8.8e-07 60.5 104 29.8
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 8.8e-07 60.5 104 29.8
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 1.5e-06 59.7 111 25.2
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 2.0e-06 59.3 109 28.4
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 2.6e-06 58.9 104 25.0
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 3.4e-06 58.5 191 22.0
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 5.7e-06 57.8 109 28.4
Lj3A954G70 Lonicera japonica HOM05D003809 ORTHO05D003935 7.5e-06 57.4 104 26.0
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 9.8e-06 57.0 111 22.5


User provided reference genes

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