Gene: AT2G04270
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G04270
- Transcript Identifier AT2G04270.4
- Gene Type Coding gene
- Location Chr2 : 1476506-1480014 : positive
Gene Family Information
- ID HOM05D006371
- #Genes/#Species 125/96
- Phylogenetic origin
- ID ORTHO05D008309
- #Genes/#Species 121/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT2G04270.4
- symbol RNEE/G
- Alias RNE,RNase E
- full_name RNAse E/G-like
- uniprot F4IV66
Descriptions
- Description RNAse E/G-like protein
- Computational description RNAse E/G-like (RNEE/G); FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Carbohydrate-binding-like fold (InterPro:IPR013784), Ribonuclease E/G (InterPro:IPR004659), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Immunoglobulin-like fold (InterPro:IPR013783), RNA-binding protein AU-1/Ribonuclease E/G (InterPro:IPR019307); Has 10085 Blast hits to 8560 proteins in 1893 species: Archae - 5; Bacteria - 6357; Metazoa - 7; Fungi - 75; Plants - 95; Viruses - 0; Other Eukaryotes - 3546 (source: NCBI BLink).
- Computational description RNAse E/G-like (RNEE/G); FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA-binding protein AU-1/Ribonuclease E/G (InterPro:IPR019307), Ribonuclease E/G (InterPro:IPR004659); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0090501 | IEA | GOA Database | RNA phosphodiester bond hydrolysis | |
GO:0006396 | IEA | Gene Ontology | RNA processing | |
GO:0006396 | IEA | InterPro | RNA processing | |
GO:0006397 | IEA | GOA Database | mRNA processing | |
GO:0090502 | IEA | GOA Database | RNA phosphodiester bond hydrolysis, endonucleolytic | |
GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis | |
GO:0006364 | IBA | Gene Ontology | rRNA processing | 1 |
GO:1901259 | IMP | Gene Ontology | chloroplast rRNA processing | 2 |
GO:0010239 | IMP | Gene Ontology | chloroplast mRNA processing | 2 |
GO:0009658 | IMP | Gene Ontology | chloroplast organization | 3 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0004540 | IBA IEA | Gene Ontology | ribonuclease activity | 1 |
GO:0004540 | IEA | InterPro | ribonuclease activity | |
GO:0003723 | IEA | GOA Database | RNA binding | |
GO:0003723 | IEA | InterPro | RNA binding | |
GO:0030246 | IEA | GOA Database | carbohydrate binding | |
GO:0004518 | IEA | GOA Database | nuclease activity | |
GO:0004519 | IEA | GOA Database | endonuclease activity | |
GO:0016787 | IEA | GOA Database | hydrolase activity | |
GO:0046872 | IEA | GOA Database | metal ion binding | |
GO:0004521 | IDA | Gene Ontology | endoribonuclease activity | 3 |
GO:2001070 | IEA | Gene Ontology | starch binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0009507 | IEA | GOA Database | chloroplast | |
GO:0009507 | IDA, IMP, HDA | Gene Ontology | chloroplast | 2 3 4 |
GO:0009536 | IEA | GOA Database | plastid | |
GO:0009570 | IEA | GOA Database | chloroplast stroma | |
GO:0005737 | ISM, IBA | Gene Ontology | cytoplasm | 1 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
16.11.1.3 | RNA processing.organelle machinery.ribonuclease activities.endoribonuclease (RNase E) |