Gene: AT2G04270

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G04270
  • Transcript Identifier AT2G04270.4
  • Gene Type Coding gene
  • Location Chr2 : 1476506-1480014 : positive

Gene Family Information

  • ID HOM05D006371
  • #Genes/#Species 125/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G04270.4
  • symbol RNEE/G
  • Alias RNE,RNase E
  • full_name RNAse E/G-like
  • uniprot F4IV66

Descriptions

  • Description RNAse E/G-like protein
  • Computational description RNAse E/G-like (RNEE/G); FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Carbohydrate-binding-like fold (InterPro:IPR013784), Ribonuclease E/G (InterPro:IPR004659), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Immunoglobulin-like fold (InterPro:IPR013783), RNA-binding protein AU-1/Ribonuclease E/G (InterPro:IPR019307); Has 10085 Blast hits to 8560 proteins in 1893 species: Archae - 5; Bacteria - 6357; Metazoa - 7; Fungi - 75; Plants - 95; Viruses - 0; Other Eukaryotes - 3546 (source: NCBI BLink).
  • Computational description RNAse E/G-like (RNEE/G); FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA-binding protein AU-1/Ribonuclease E/G (InterPro:IPR019307), Ribonuclease E/G (InterPro:IPR004659); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090501
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis
GO:0006396
IEA
Gene OntologyRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006364
IBA
Gene OntologyrRNA processing1
GO:1901259
IMP
Gene Ontologychloroplast rRNA processing2
GO:0010239
IMP
Gene Ontologychloroplast mRNA processing2
GO:0009658
IMP
Gene Ontologychloroplast organization3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004540
IBA
IEA
Gene Ontologyribonuclease activity1
GO:0004540
IEA
InterProribonuclease activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0030246
IEA
GOA Databasecarbohydrate binding
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0004521
IDA
Gene Ontologyendoribonuclease activity3
GO:2001070
IEA
Gene Ontologystarch binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, IMP, HDA
Gene Ontologychloroplast2 3 4
GO:0009536
IEA
GOA Databaseplastid
GO:0009570
IEA
GOA Databasechloroplast stroma
GO:0005737
ISM, IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012340 Nucleic acid-binding, OB-fold
IPR019307 RNA-binding protein AU-1/Ribonuclease E/G
IPR004659 Ribonuclease E/G
Mapman id Description
16.11.1.3 RNA processing.organelle machinery.ribonuclease activities.endoribonuclease (RNase E)