Gene: Sopen02g027900

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g027900
  • Transcript Identifier Sopen02g027900.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 50549156-50555063 : positive

Gene Family Information

  • ID HOM05D006371
  • #Genes/#Species 125/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g027900.1

Descriptions

  • Description Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose. | RNAse E/G-like (RNEE/G) | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , Carbohydrate-binding-like fold , Ribonuclease E/G , Glycoside hydrolase, carbohydrate-binding , Nucleic acid-binding, OB-fold-like , Immunoglobulin-like fold , RNA-binding protein AU-1/Ribonuclease E/G ., RNA-binding protein AU-1/Ribonuclease E/G
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing
GO:1901259
ISO
PLAZA Integrative Orthologychloroplast rRNA processing AT2G04270
GO:0010239
ISO
PLAZA Integrative Orthologychloroplast mRNA processing AT2G04270
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT2G04270

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0004540
IEA
InterProribonuclease activity
GO:2001070
ISO
PLAZA Homology (enrichment)starch binding HOM05D006371
GO:0030246
ISO
PLAZA Homology (enrichment)carbohydrate binding HOM05D006371
GO:0004521
ISO
PLAZA Integrative Orthologyendoribonuclease activity AT2G04270

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT2G04270

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019307 RNA-binding protein AU-1/Ribonuclease E/G
IPR004659 Ribonuclease E/G
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
16.11.1.3 RNA processing.organelle machinery.ribonuclease activities.endoribonuclease (RNase E)