Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p034313 Quercus lobata HOM05D000032 ORTHO05D337597 6.5e-31 136.7 68 100.0
QL04p087261 Quercus lobata HOM05D000032 ORTHO05D007583 6.3e-18 93.6 50 90.0
CiPaw.11G061100 Carya illinoinensis HOM05D000032 ORTHO05D007583 4.5e-16 87.4 50 84.0
Ciclev10004831m.g Citrus clementina HOM05D000032 ORTHO05D007583 5.9e-16 87.0 50 82.0
TWI38G1895 Tripterygium wilfordii HOM05D000032 ORTHO05D007583 5.9e-16 87.0 50 82.0
Cc05_g16440 Coffea canephora HOM05D000032 ORTHO05D007583 7.7e-16 86.7 50 82.0
Manes.14G009300 Manihot esculenta HOM05D000032 ORTHO05D007583 1.3e-15 85.9 50 84.0
Peaxi162Scf00088g01323 Petunia axillaris HOM05D000032 ORTHO05D007583 1.7e-15 85.5 50 80.0
Hund12421 Selenicereus undatus HOM05D000032 ORTHO05D007583 1.7e-15 85.5 50 80.0
CSS0000848 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007583 2.2e-15 85.1 50 78.0
CSS0011577 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007583 2.2e-15 85.1 50 78.0
Nitab4.5_0003777g0010 Nicotiana tabacum HOM05D000032 ORTHO05D007583 2.9e-15 84.7 50 80.0
Nitab4.5_0008957g0020 Nicotiana tabacum HOM05D000032 ORTHO05D007583 2.9e-15 84.7 50 80.0
Sed0019877 Sechium edule HOM05D000032 ORTHO05D007583 2.9e-15 84.7 50 82.0
Solyc10g005520.3 Solanum lycopersicum HOM05D000032 ORTHO05D007583 2.9e-15 84.7 50 80.0
Sopen10g001500 Solanum pennellii HOM05D000032 ORTHO05D007583 2.9e-15 84.7 50 80.0
PGSC0003DMG400011245 Solanum tuberosum HOM05D000032 ORTHO05D007583 2.9e-15 84.7 50 80.0
HPP92_023518 Vanilla planifolia HOM05D000032 ORTHO05D007583 2.9e-15 84.7 50 80.0
Cpa.g.sc34.37 Carica papaya HOM05D000032 ORTHO05D007583 5.0e-15 84.0 50 80.0
Dinv42475 Davidia involucrata HOM05D000032 ORTHO05D007583 5.0e-15 84.0 50 78.0
Lsat_1_v5_gn_9_83400 Lactuca sativa HOM05D000032 ORTHO05D007583 5.0e-15 84.0 50 78.0
Lju361A5G61 Lonicera japonica HOM05D000032 ORTHO05D007583 5.0e-15 84.0 50 78.0
Oeu044449.2 Olea europaea HOM05D000032 ORTHO05D007583 5.0e-15 84.0 50 80.0
PGR004G2143 Punica granatum HOM05D000032 ORTHO05D007583 5.0e-15 84.0 50 80.0
GSVIVG01036761001 Vitis vinifera HOM05D000032 ORTHO05D007583 5.0e-15 84.0 50 76.0
Lju361C5T0 Lonicera japonica HOM05D000032 ORTHO05D007583 6.5e-15 83.6 50 76.0
CAN.G492.78 Capsicum annuum HOM05D000032 ORTHO05D007583 8.5e-15 83.2 50 78.0
Hma1.2p1_0334F.1_g128443 Hydrangea macrophylla HOM05D000032 ORTHO05D007583 8.5e-15 83.2 55 72.7
vmacro11696 Vaccinium macrocarpon HOM05D000032 ORTHO05D007583 8.5e-15 83.2 50 78.0
Nn7g38216 Nelumbo nucifera HOM05D000032 ORTHO05D007583 1.1e-14 82.8 50 78.0
SGA_v2.0_scaffold7G03614 Striga asiatica HOM05D000032 ORTHO05D007583 1.1e-14 82.8 50 80.0
Eucgr.J00253 Eucalyptus grandis HOM05D000032 ORTHO05D007583 1.5e-14 82.4 50 78.0
Eucgr.L02030 Eucalyptus grandis HOM05D000032 ORTHO05D007583 1.5e-14 82.4 50 78.0
COL.COLO4_19752 Corchorus olitorius HOM05D000032 ORTHO05D007583 1.9e-14 82.0 50 76.0
MELO3C019636.2 Cucumis melo HOM05D000032 ORTHO05D007583 2.5e-14 81.6 50 78.0
Gohir.A08G101100 Gossypium hirsutum HOM05D000032 ORTHO05D007583 2.5e-14 81.6 50 78.0
Gohir.D08G084700 Gossypium hirsutum HOM05D000032 ORTHO05D007583 2.5e-14 81.6 50 78.0
Gorai.004G089100 Gossypium raimondii HOM05D000032 ORTHO05D007583 2.5e-14 81.6 50 78.0
HanXRQChr05g0160521 Helianthus annuus HOM05D000032 ORTHO05D007583 4.2e-14 80.9 50 76.0
TAR627G0973 Trochodendron aralioides HOM05D000032 ORTHO05D007583 4.2e-14 80.9 50 78.0
PSO675G1404 Papaver somniferum HOM05D000032 ORTHO05D007583 5.5e-14 80.5 50 76.0
PSO675G5864 Papaver somniferum HOM05D000032 ORTHO05D007583 5.5e-14 80.5 50 76.0
Prupe.4G132500 Prunus persica HOM05D000032 ORTHO05D007583 5.5e-14 80.5 50 76.0
PSO675G4900 Papaver somniferum HOM05D000032 ORTHO05D007583 7.2e-14 80.1 50 74.0
Thecc.07G182400 Theobroma cacao HOM05D000032 ORTHO05D007583 9.4e-14 79.7 50 74.0
ClCG02G018650 Citrullus lanatus HOM05D000032 ORTHO05D007583 1.2e-13 79.3 48 79.2
Duzib213G0880 Durio zibethinus HOM05D000032 ORTHO05D007583 1.2e-13 79.3 50 72.0
Lju361A5T65 Lonicera japonica HOM05D000032 ORTHO05D007583 1.6e-13 79.0 47 76.6
Sc18g0002860 Simmondsia chinensis HOM05D000032 ORTHO05D007583 2.1e-13 78.6 50 74.0
Rhsim05G0210300 Rhododendron simsii HOM05D007284 ORTHO05D007583 2.7e-13 78.2 50 74.0
Rhsim06G0242600 Rhododendron simsii HOM05D000032 ORTHO05D007583 2.7e-13 78.2 50 74.0
Sabra08G0062900 Salix brachista HOM05D000032 ORTHO05D007583 2.7e-13 78.2 50 74.0
SHI08505 Sapria himalayana HOM05D000032 ORTHO05D007583 3.6e-13 77.8 50 74.0
SEGI_08635 Sequoiadendron giganteum HOM05D000032 ORTHO05D007583 3.6e-13 77.8 50 74.0
CANSAT80G1079 Cannabis sativa HOM05D000032 ORTHO05D007583 4.7e-13 77.4 50 72.0
CsaV3_6G013520 Cucumis sativus L. HOM05D000032 ORTHO05D007583 4.7e-13 77.4 50 74.0
Actinidia12759 Actinidia chinensis HOM05D000032 ORTHO05D007583 6.1e-13 77.0 50 74.0
Cfa004853 Carpinus fangiana HOM05D000032 ORTHO05D007583 1.0e-12 76.3 50 74.0
Potri.008G084700 Populus trichocarpa HOM05D000032 ORTHO05D007583 1.0e-12 76.3 50 72.0
unitig_46.g18515 Utricularia gibba HOM05D000032 ORTHO05D007583 1.0e-12 76.3 50 74.0
Aqoxy1G02721 Aquilegia oxysepala HOM05D000032 ORTHO05D007583 1.4e-12 75.9 50 70.0
Aqoxy7G02533 Aquilegia oxysepala HOM05D000032 ORTHO05D007583 1.4e-12 75.9 50 68.0
Atru.BG.157.p Acer truncatum HOM05D000032 ORTHO05D007583 1.8e-12 75.5 50 70.0
CSS0041111 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007583 1.8e-12 75.5 45 75.6
ECA246G1435 Erigeron canadensis HOM05D000032 ORTHO05D007583 2.3e-12 75.1 50 70.0
Mapoly0001s0280 Marchantia polymorpha HOM05D000032 ORTHO05D007583 2.3e-12 75.1 50 70.0
ATR0561G064 Amborella trichopoda HOM05D000032 ORTHO05D007583 3.0e-12 74.7 50 72.0
Migut.M01522 Erythranthe guttata HOM05D000032 ORTHO05D007583 3.0e-12 74.7 50 70.0
FvH4_3g14750 Fragaria vesca HOM05D000032 ORTHO05D007583 3.0e-12 74.7 50 70.0
FAN11G2102 Fragaria x ananassa HOM05D000032 ORTHO05D007583 3.0e-12 74.7 50 70.0
FAN21G3619 Fragaria x ananassa HOM05D000032 ORTHO05D007583 3.0e-12 74.7 50 70.0
FAN25G3471 Fragaria x ananassa HOM05D000032 ORTHO05D007583 3.0e-12 74.7 50 70.0
DCAR_013722 Daucus carota HOM05D000032 ORTHO05D007583 4.0e-12 74.3 50 70.0
THA.LOC104812370 Tarenaya hassleriana HOM05D000032 ORTHO05D007583 6.8e-12 73.6 50 68.0
RcHm_v2.0_Chr5g0024261 Rosa chinensis HOM05D000032 ORTHO05D007583 1.2e-11 72.8 50 66.0
CARHR016750 Cardamine hirsuta HOM05D000032 ORTHO05D007583 1.5e-11 72.4 50 66.0
FAN16G1646 Fragaria x ananassa HOM05D000032 ORTHO05D007583 2.0e-11 72.0 50 68.0
MD10G1209000 Malus domestica HOM05D000032 ORTHO05D007583 2.6e-11 71.6 50 72.0
Rhsim10G0211000 Rhododendron simsii HOM05D000032 ORTHO05D007583 3.4e-11 71.2 50 70.0
A09p60930 Brassica napus HOM05D000032 ORTHO05D007583 4.4e-11 70.9 50 66.0
C08p44530 Brassica napus HOM05D000032 ORTHO05D007583 4.4e-11 70.9 50 66.0
BolC8t51999H Brassica oleracea HOM05D000032 ORTHO05D007583 4.4e-11 70.9 50 66.0
BraA09t41466Z Brassica rapa HOM05D000032 ORTHO05D007583 4.4e-11 70.9 50 66.0
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 7.5e-11 70.1 50 64.0
AagrBONN_evm.TU.Sc2ySwM_228.3131 Anthoceros agrestis HOM05D000032 ORTHO05D007583 9.8e-11 69.7 50 66.0
Aa31LG7G810 Aethionema arabicum HOM05D000032 ORTHO05D007583 1.7e-10 68.9 50 62.0
BolC5t30169H Brassica oleracea HOM05D000032 ORTHO05D032284 1.7e-10 68.9 83 44.6
Thhalv10007467m.g Eutrema salsugineum HOM05D000032 ORTHO05D007583 1.7e-10 68.9 50 62.0
CDE08G1298 Ceratophyllum demersum HOM05D000032 ORTHO05D007583 3.7e-10 67.8 50 64.0
C05p14430 Brassica napus HOM05D000032 ORTHO05D032284 4.8e-10 67.4 83 43.4
Zm00001eb328480 Zea mays HOM05D000032 ORTHO05D007583 4.8e-10 67.4 50 62.0
AUR62037640 Chenopodium quinoa HOM05D000032 ORTHO05D007583 6.3e-10 67.0 50 60.0
AUR62039183 Chenopodium quinoa HOM05D000032 ORTHO05D007583 6.3e-10 67.0 50 60.0
Pp3c16_16520 Physcomitrium patens HOM05D000032 ORTHO05D007583 8.3e-10 66.6 50 62.0
AT1G16280 Arabidopsis thaliana HOM05D000032 ORTHO05D007583 1.4e-09 65.9 50 62.0
Carub.0001s1602 Capsella rubella HOM05D000032 ORTHO05D007583 3.1e-09 64.7 50 60.0
Os07g0633500 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007583 3.1e-09 64.7 50 58.0
AL1G28400 Arabidopsis lyrata HOM05D000032 ORTHO05D007583 4.1e-09 64.3 50 60.0
Glyma.08G165600 Glycine max HOM05D000032 ORTHO05D007583 7.0e-09 63.5 50 64.0
EL10Ac5g12413 Beta vulgaris HOM05D000032 ORTHO05D007583 1.2e-08 62.8 50 60.0
Medtr2g066050 Medicago truncatula HOM05D000032 ORTHO05D007583 1.6e-08 62.4 50 64.0
VMungo1080G1807 Vigna mungo HOM05D000032 ORTHO05D007583 1.6e-08 62.4 50 62.0
Phvul.005G074600 Phaseolus vulgaris HOM05D000032 ORTHO05D007583 2.7e-08 61.6 50 62.0
Lj3g0027557 Lotus japonicus HOM05D000032 ORTHO05D007583 3.5e-08 61.2 50 60.0
Glyma.15G261600 Glycine max HOM05D000032 ORTHO05D007583 4.5e-08 60.8 50 62.0
SMO228G0036 Selaginella moellendorffii HOM05D000032 ORTHO05D007583 4.5e-08 60.8 50 52.0
CBR_g31037 Chara braunii HOM05D000032 ORTHO05D007583 5.9e-08 60.5 50 54.0
Lalb_Chr25g0284541 Lupinus albus HOM05D000032 ORTHO05D007583 7.7e-08 60.1 50 60.0
Psat1g011680 Pisum sativum HOM05D000032 ORTHO05D007583 1.3e-07 59.3 50 62.0
arahy.Tifrunner.gnm1.ann1.GIM9L3 Arachis hypogaea HOM05D000032 ORTHO05D007583 5.0e-07 57.4 50 58.0
arahy.Tifrunner.gnm1.ann1.J5FT9T Arachis hypogaea HOM05D000032 ORTHO05D007583 5.0e-07 57.4 50 58.0
TPR.G33835 Trifolium pratense HOM05D000032 ORTHO05D007583 5.0e-07 57.4 50 60.0
Psat2g070000 Pisum sativum HOM05D000032 ORTHO05D007583 6.6e-07 57.0 50 60.0
TPR.G10509 Trifolium pratense HOM05D000032 ORTHO05D007583 1.1e-06 56.2 50 56.0
arahy.Tifrunner.gnm1.ann1.CDE3ZY Arachis hypogaea HOM05D000032 ORTHO05D007583 5.5e-06 53.9 50 56.0
Ca_17135_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007583 7.2e-06 53.5 50 56.0


User provided reference genes

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