Gene: Sopen10g001500

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g001500
  • Transcript Identifier Sopen10g001500.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 463513-469888 : negative

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g001500.1

Descriptions

  • Description RNA helicase 36 (RH36) | FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding | INVOLVED IN: post-embryonic development, embryo sac development, rRNA processing | LOCATED IN: nucleus | EXPRESSED IN: 30 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , RNA helicase, ATP-dependent, DEAD-box, conserved site , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc10g005520.3
GO:0009561
ISO
PLAZA Integrative Orthologymegagametogenesis AT1G16280
GO:0009791
ISO
PLAZA Integrative Orthologypost-embryonic development AT1G16280
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT1G16280
GO:0009553
ISO
PLAZA Integrative Orthologyembryo sac development AT1G16280

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G16280
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc10g005520.3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G16280
GO:0090406
ISO
PLAZA Integrative Orthologypollen tube AT1G16280

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
17.1.3.2.1.14 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (SWA3/RH36)