Gene: Cc05_g16440

General Information

Structural Information

  • Species Coffea canephora
  • Gene Identifier Cc05_g16440
  • Transcript Identifier Cc05_g16440.1
  • Gene Type Coding gene
  • Location chr5 : 29026507-29030730 : positive

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • UniProtKB B9RHY9
  • UniProtKB Q9Y6V7
  • UniProtKB D7T0V5
  • UniProtKB Q9SA27
  • UniProtKB A5B008
  • UniProtKB Q8L4E9
  • id GSCOCG00038561001

Descriptions

  • Description DEAD-box ATP-dependent RNA helicase 36
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc10g005520.3
GO:0009561
ISO
PLAZA Integrative Orthologymegagametogenesis AT1G16280
GO:0009791
ISO
PLAZA Integrative Orthologypost-embryonic development AT1G16280
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT1G16280
GO:0009553
ISO
PLAZA Integrative Orthologyembryo sac development AT1G16280

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G16280
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc10g005520.3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G16280
GO:0090406
ISO
PLAZA Integrative Orthologypollen tube AT1G16280

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011545 DEAD/DEAH box helicase domain
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
17.1.3.2.1.14 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (SWA3/RH36)