Gene: Pp3c16_16520

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c16_16520
  • Transcript Identifier Pp3c16_16520V3.2
  • Gene Type Coding gene
  • Location Chr16 : 10209125-10211744 : positive

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c16_16520V3.2
  • pacid 32985005
  • alias Pp1s197_70V6
  • alias Phpat.016G066000
  • alias Phypa_220567
  • uniprot A9TB38

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IBA
IEA
GOA DatabaserRNA processing
GO:0009553
ISO
PLAZA Integrative Orthologyembryo sac development AT1G16280
GO:0009561
ISO
PLAZA Integrative Orthologymegagametogenesis AT1G16280
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc10g005520.3
GO:0009791
IEA
GOA Databasepost-embryonic development

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G16280
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003724
IEA
GOA DatabaseRNA helicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0090406
IEA
GOA Databasepollen tube

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
17.1.3.2.1.14 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (SWA3/RH36)