Gene: Nitab4.5_0003777g0010

General Information

Structural Information

Species Nicotiana tabacum
Gene Identifier Nitab4.5_0003777g0010
Transcript Identifier Nitab4.5_0003777g0010.1
Gene Type Coding gene
Location Nitab4.5_0003777 : 21731-29242 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000032
#Genes/#Species 5307/100
Phylogenetic origin

ID ORTHO05D007583
#Genes/#Species 129/96
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

tid Nitab4.5_0003777g0010.1
SR1-identifier Nta15g25670.1

Descriptions

Short descriptions
Ortholog descriptions

Description DNA/RNA helicase, DEAD/DEAH box type, N-terminal, Helicase, superfamily 1/2, ATP-binding domain, P-loop containing nucleoside triphosphate hydrolase, Helicase, C-terminal, RNA helicase, ATP-dependent, DEAD-box, conserved site, RNA helicase, DEAD-box type, Q motif

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Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016070	ISO	PLAZA Integrative Orthology	RNA metabolic process	Solyc10g005520.3
GO:0009561	ISO	PLAZA Integrative Orthology	megagametogenesis	AT1G16280
GO:0009791	ISO	PLAZA Integrative Orthology	post-embryonic development	AT1G16280
GO:0006364	ISO	PLAZA Integrative Orthology	rRNA processing	AT1G16280
GO:0009553	ISO	PLAZA Integrative Orthology	embryo sac development	AT1G16280

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005524	IEA	InterPro	ATP binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT1G16280
GO:0003724	ISO	PLAZA Integrative Orthology	RNA helicase activity	Solyc10g005520.3

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT1G16280
GO:0090406	ISO	PLAZA Integrative Orthology	pollen tube	AT1G16280

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR011545	DEAD/DEAH box helicase domain

Mapman id	Description
17.1.3.2.1.14	Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (SWA3/RH36)