Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 3.4e-74 282.0 187 100.0
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 3.6e-47 192.2 142 71.1
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 4.7e-47 191.8 112 80.4
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 8.0e-47 191.0 112 79.5
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 1.6e-42 176.8 115 79.1
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 3.5e-42 175.6 120 76.7
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 3.5e-42 175.6 120 76.7
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 3.5e-42 175.6 116 75.9
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 5.9e-42 174.9 120 75.8
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 1.0e-41 174.1 112 74.1
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 8.6e-41 171.0 117 73.5
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 8.6e-41 171.0 112 75.9
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 1.1e-40 170.6 113 74.3
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 3.3e-40 169.1 115 73.9
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 3.3e-40 169.1 115 73.9
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 4.3e-40 168.7 115 73.9
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 4.3e-40 168.7 115 73.9
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 4.3e-40 168.7 115 72.2
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 9.5e-40 167.5 112 69.6
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 1.2e-39 167.2 107 76.6
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 1.2e-39 167.2 113 75.2
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 3.6e-39 165.6 122 72.1
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 3.6e-39 165.6 112 72.3
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 4.7e-39 165.2 113 74.3
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 8.0e-39 164.5 115 66.1
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 8.0e-39 164.5 121 68.6
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 1.4e-38 163.7 113 70.8
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 1.4e-38 163.7 116 70.7
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 1.8e-38 163.3 112 72.3
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 3.0e-38 162.5 112 69.6
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 3.0e-38 162.5 112 71.4
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 3.0e-38 162.5 144 61.1
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 3.0e-38 162.5 117 71.8
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 4.0e-38 162.2 135 60.7
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 4.0e-38 162.2 115 68.7
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 4.0e-38 162.2 115 65.2
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 8.9e-38 161.0 112 71.4
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 8.9e-38 161.0 111 66.7
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 8.9e-38 161.0 112 71.4
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 1.5e-37 160.2 117 69.2
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 1.5e-37 160.2 112 71.4
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 1.5e-37 160.2 121 69.4
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 2.0e-37 159.8 112 67.9
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 2.0e-37 159.8 112 71.4
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 2.6e-37 159.5 112 67.9
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 2.6e-37 159.5 122 69.7
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 2.6e-37 159.5 117 70.9
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 3.4e-37 159.1 112 71.4
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 4.4e-37 158.7 123 65.9
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 4.4e-37 158.7 112 70.5
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 4.4e-37 158.7 117 68.4
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 4.4e-37 158.7 112 70.5
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 4.4e-37 158.7 112 70.5
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 5.7e-37 158.3 112 70.5
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 5.7e-37 158.3 112 68.8
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 5.7e-37 158.3 112 72.3
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 5.7e-37 158.3 112 70.5
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 7.5e-37 157.9 119 68.9
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 9.8e-37 157.5 112 68.8
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 9.8e-37 157.5 112 72.3
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 1.7e-36 156.8 143 57.3
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 2.2e-36 156.4 112 68.8
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 2.9e-36 156.0 115 66.1
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 2.9e-36 156.0 117 66.7
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 3.7e-36 155.6 112 67.9
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 4.9e-36 155.2 112 69.6
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 6.4e-36 154.8 112 70.5
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 6.4e-36 154.8 112 70.5
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 8.3e-36 154.5 112 70.5
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 1.1e-35 154.1 124 63.7
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 1.4e-35 153.7 130 62.3
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 2.4e-35 152.9 119 66.4
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 4.1e-35 152.1 113 69.0
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 4.1e-35 152.1 117 66.7
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 7.0e-35 151.4 112 67.0
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 9.2e-35 151.0 117 65.0
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 5.9e-34 148.3 112 66.1
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 5.9e-34 148.3 112 66.1
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 1.3e-33 147.1 130 59.2
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 1.3e-33 147.1 112 66.1
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 3.0e-33 146.0 119 64.7
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 3.0e-33 146.0 142 57.0
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 3.9e-33 145.6 115 66.1
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 6.6e-33 144.8 112 64.3
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 1.5e-32 143.7 96 72.9
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 2.5e-32 142.9 122 61.5
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 7.3e-32 141.4 137 56.9
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 9.5e-32 141.0 122 60.7
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 9.5e-32 141.0 113 61.9
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 1.0e-30 137.5 116 60.3
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 4.4e-29 132.1 95 65.3
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.3e-28 130.6 99 63.6
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.3e-28 130.6 100 63.0
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 2.7e-26 122.9 92 67.4
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 6.0e-26 121.7 94 63.8
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.0e-25 120.9 106 58.5
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.3e-25 120.6 92 66.3
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.3e-25 120.6 92 66.3
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 1.5e-24 117.1 148 45.3
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 4.3e-24 115.5 68 77.9
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 1.2e-23 114.0 121 49.6
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 6.2e-23 111.7 66 75.8
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 8.1e-23 111.3 107 51.4
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 6.8e-22 108.2 112 51.8
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 1.2e-21 107.5 112 53.6
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-21 106.3 63 76.2
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 7.5e-21 104.8 145 41.4
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 7.1e-19 98.2 53 83.0
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 7.1e-19 98.2 53 83.0
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 1.6e-18 97.1 103 53.4
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 2.3e-14 83.2 98 42.9
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 1.7e-12 77.0 113 44.2


User provided reference genes

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