Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 7.2e-167 590.5 297 100.0
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 1.0e-165 586.6 297 99.7
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 1.2e-84 317.4 347 56.8
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 3.1e-69 266.2 144 92.4
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.9e-58 230.3 309 45.0
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 6.7e-56 221.9 303 47.2
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 5.7e-55 218.8 303 43.6
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 3.8e-51 206.1 312 43.9
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 4.2e-50 202.6 295 39.7
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.0e-48 198.0 268 45.9
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.4e-48 197.6 296 43.9
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 4.4e-47 192.6 302 42.4
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 9.7e-47 191.4 312 42.0
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 8.2e-46 188.3 279 40.1
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.1e-45 188.0 303 43.9
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 1.4e-45 187.6 263 46.8
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.7e-44 181.8 304 42.4
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.8e-43 179.5 294 42.9
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 6.1e-41 172.2 314 39.5
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.4e-40 171.0 325 39.7
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 3.0e-40 169.9 191 48.2
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 5.2e-40 169.1 187 48.1
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.5e-39 167.5 338 37.0
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 6.3e-38 162.2 303 39.3
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.1e-37 159.5 313 39.0
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 7.0e-37 158.7 323 37.2
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.9e-36 155.6 308 38.6
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 1.7e-35 154.1 206 46.1
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 4.2e-34 149.4 272 37.5
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 9.4e-34 148.3 270 35.9
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.7e-33 146.7 334 35.3
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 3.0e-32 143.3 308 36.7
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.5e-31 141.0 323 32.8
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 2.0e-31 140.6 301 33.6
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 2.6e-31 140.2 262 32.8
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 7.5e-31 138.7 283 34.3
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-30 137.5 350 34.9
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 4.8e-30 136.0 287 35.9
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 8.3e-30 135.2 329 33.7
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 4.1e-29 132.9 294 31.6
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 5.4e-29 132.5 278 33.8
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.2e-28 131.3 329 35.0
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.6e-28 131.0 307 31.3
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 3.5e-28 129.8 317 32.8
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.0e-27 128.3 207 39.1
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.7e-27 127.5 363 30.6
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.7e-27 127.5 329 33.4
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 2.3e-27 127.1 316 31.6
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 2.9e-27 126.7 316 31.3
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.9e-27 126.7 373 32.2
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 5.0e-27 125.9 318 31.4
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 5.0e-27 125.9 314 33.8
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 1.1e-26 124.8 315 31.4
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 1.1e-26 124.8 331 30.8
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.1e-26 124.8 321 31.2
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 1.9e-26 124.0 310 32.3
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 2.5e-26 123.6 285 33.3
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 3.3e-26 123.2 313 31.9
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 9.5e-26 121.7 276 33.7
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.2e-25 121.3 328 31.4
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.6e-25 120.9 337 30.6
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 2.8e-25 120.2 325 32.6
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 2.8e-25 120.2 284 33.5
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 3.6e-25 119.8 324 33.0
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 3.6e-25 119.8 348 30.7
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 6.1e-25 119.0 316 31.0
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 8.0e-25 118.6 258 31.8
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 8.0e-25 118.6 258 31.8
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.0e-24 118.2 261 32.6
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 1.4e-24 117.9 298 32.9
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 2.3e-24 117.1 261 32.6
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 4.0e-24 116.3 312 32.4
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 4.0e-24 116.3 297 31.6
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 6.8e-24 115.5 297 31.3
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 8.9e-24 115.2 314 31.8
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 8.9e-24 115.2 278 33.5
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.5e-23 114.4 329 30.4
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 3.4e-23 113.2 192 41.1
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 4.4e-23 112.8 295 31.2
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 7.5e-23 112.1 276 31.5
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.3e-22 111.3 243 32.5
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 1.7e-22 110.9 244 32.0
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 8.3e-22 108.6 266 33.8
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 3.2e-21 106.7 211 35.5
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 4.1e-21 106.3 142 46.5
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 5.4e-21 105.9 266 33.5
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 1.2e-20 104.8 210 33.3
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 2.0e-20 104.0 314 29.9
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 5.9e-20 102.4 285 32.3
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 1.0e-19 101.7 192 35.9
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.0e-19 99.4 285 32.6
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 1.5e-18 97.8 310 28.7
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 3.3e-18 96.7 200 35.0
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 3.3e-18 96.7 199 36.7
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 4.3e-18 96.3 167 38.9
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 7.3e-18 95.5 175 38.3
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.8e-17 93.6 207 33.3
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.0e-16 91.7 237 32.1
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 3.1e-16 90.1 269 27.1
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 4.0e-16 89.7 165 38.2
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 4.4e-15 86.3 196 28.6
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 8.3e-14 82.0 314 27.1
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.1e-13 81.6 201 31.3
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.4e-13 81.3 189 35.4
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.6e-12 77.8 153 35.3
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 2.0e-12 77.4 163 35.0
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 7.8e-12 75.5 150 34.7
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 5.0e-11 72.8 122 36.1
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 5.0e-11 72.8 122 36.1
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 6.6e-11 72.4 91 41.8
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 8.6e-11 72.0 91 41.8
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 8.6e-11 72.0 132 36.4
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 1.5e-10 71.2 167 30.5
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.5e-10 71.2 277 26.0
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 2.5e-10 70.5 167 29.9
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 3.3e-10 70.1 207 30.0
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 5.6e-10 69.3 146 32.2
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 5.6e-10 69.3 203 27.6
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 7.3e-10 68.9 65 50.8
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 9.5e-10 68.6 171 32.7
TWI31G0695 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.2e-09 68.2 97 43.3
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.6e-09 66.6 144 31.9
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 6.2e-09 65.9 149 29.5
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 8.0e-09 65.5 170 28.2
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 1.4e-08 64.7 167 28.7
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.8e-08 64.3 196 26.0
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.8e-08 64.3 196 26.0
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.8e-08 64.3 168 26.8
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 2.3e-08 63.9 173 26.6
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 2.3e-08 63.9 139 30.2
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 2.3e-08 63.9 169 30.8
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 4.0e-08 63.2 142 35.9
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 5.2e-08 62.8 151 30.5
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 5.2e-08 62.8 162 29.0
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 6.8e-08 62.4 168 28.0
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 1.2e-07 61.6 167 28.7
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 1.2e-07 61.6 167 27.5
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.5e-07 61.2 196 25.5
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.5e-07 61.2 172 26.2
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 2.0e-07 60.8 172 29.7
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 2.0e-07 60.8 172 29.7
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 2.0e-07 60.8 193 28.0
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 2.6e-07 60.5 168 32.7
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 2.6e-07 60.5 196 26.0
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 2.6e-07 60.5 232 23.7
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 2.6e-07 60.5 174 25.9
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 3.4e-07 60.1 167 26.3
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 5.8e-07 59.3 166 25.3
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 5.8e-07 59.3 172 29.7
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 9.8e-07 58.5 167 28.7
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 9.8e-07 58.5 129 33.3
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.7e-06 57.8 168 27.4
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.7e-06 57.8 209 28.2
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 1.7e-06 57.8 178 25.3
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 1.7e-06 57.8 129 32.6
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 1.7e-06 57.8 171 28.7
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 2.2e-06 57.4 167 26.9
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 2.2e-06 57.4 173 26.0
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 2.9e-06 57.0 167 27.5
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 2.9e-06 57.0 180 26.7
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 3.7e-06 56.6 172 27.9
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 3.7e-06 56.6 172 27.9
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 3.7e-06 56.6 174 27.0
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 3.7e-06 56.6 185 25.9
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 4.9e-06 56.2 220 25.0
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 6.4e-06 55.8 167 23.4
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 6.4e-06 55.8 167 26.3
Thecc.05G039400 Theobroma cacao HOM05D014374 ORTHO05D020491 6.4e-06 55.8 44 52.3
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 8.3e-06 55.5 176 25.0
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 8.3e-06 55.5 170 28.2
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 8.3e-06 55.5 199 24.6


User provided reference genes

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