Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1318.9 675 100.0
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1181.0 674 88.9
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1179.1 673 88.4
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1176.4 675 87.9
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1170.2 673 88.1
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1169.8 673 87.8
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1169.5 674 88.1
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1167.5 675 86.8
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1165.2 675 87.7
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1164.8 668 88.3
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1164.4 669 88.0
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1164.1 668 88.3
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1161.7 675 87.0
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1159.8 668 87.9
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1154.4 673 86.9
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1152.9 676 85.8
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1150.2 675 85.9
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1149.4 669 86.8
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1147.1 675 85.6
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1146.3 675 85.9
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1144.4 675 85.6
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1143.3 675 86.1
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1142.9 675 85.0
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1141.7 676 85.5
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1140.9 671 86.6
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1139.8 675 85.5
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1139.4 671 86.3
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1138.3 671 86.3
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1138.3 670 85.7
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1137.1 676 85.5
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1136.3 701 82.9
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1136.3 672 85.9
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1130.2 647 87.8
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1130.2 647 87.8
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1129.8 675 84.4
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1129.8 675 85.0
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1129.4 683 84.9
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1125.9 672 84.7
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1124.4 674 84.0
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1122.8 678 84.1
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1122.5 693 82.8
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1122.5 674 83.7
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1122.1 664 85.1
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1121.7 663 85.2
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1115.9 673 84.8
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1114.8 662 84.7
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1114.8 673 84.5
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1114.4 709 81.2
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1114.0 644 86.8
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1113.6 669 83.7
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1111.3 672 83.8
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1110.1 674 82.5
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1110.1 663 84.6
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1109.7 662 84.0
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1105.5 689 83.3
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1104.4 662 83.4
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1103.6 678 83.0
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 0.0e+00 1100.9 691 82.3
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1096.3 681 81.9
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1093.6 676 84.0
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1090.9 663 83.1
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 0.0e+00 1090.1 672 81.8
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1087.0 670 81.6
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1086.2 670 81.5
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1085.5 672 81.5
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 663 82.8
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 661 82.3
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1082.4 663 82.5
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1081.6 682 80.5
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1078.2 667 82.0
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 2.0e-310 1068.5 690 79.3
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 1.6e-307 1058.9 726 76.7
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 3.6e-307 1057.7 701 77.5
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 3.1e-306 1054.7 759 74.6
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 5.2e-306 1053.9 662 79.9
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 3.4e-305 1051.2 674 79.1
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 7.8e-302 1040.0 646 78.8
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 2.1e-299 1031.9 641 80.7
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 2.2e-296 1021.9 698 76.6
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 2.9e-296 1021.5 676 78.8
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.8e-291 1005.0 648 79.6
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 1.7e-285 985.7 581 84.9
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.7e-285 985.7 675 76.4
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 4.9e-280 967.6 596 82.2
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.4e-279 966.1 675 74.5
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.1e-271 939.9 590 80.2
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 9.3e-271 936.8 668 71.4
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 3.0e-269 931.8 654 75.1
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 1.5e-268 929.5 645 70.7
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 1.8e-266 922.5 676 73.1
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 7.1e-263 910.6 635 75.0
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 1.0e-261 906.7 664 69.3
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 8.7e-261 903.7 655 69.9
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 1.9e-260 902.5 673 67.9
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 1.3e-259 899.8 509 86.8
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.5e-252 875.5 704 66.6
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.7e-248 862.8 704 66.1
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 2.3e-237 825.9 443 92.1
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 4.0e-213 745.3 462 77.7
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 2.0e-201 706.4 667 56.1
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 6.2e-182 641.7 376 87.2
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.2e-177 627.5 382 79.6
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 3.5e-177 625.9 551 61.3
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 1.0e-176 624.4 368 86.4
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 3.9e-176 622.5 368 86.1
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 3.6e-174 615.9 389 82.0
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 4.7e-174 615.5 647 51.8
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 3.8e-171 605.9 659 50.7
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 8.1e-150 535.0 305 87.2
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 5.7e-143 512.3 367 73.0
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.2e-140 504.6 306 81.7
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.0e-140 503.8 305 82.3
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 3.4e-140 503.1 646 49.1
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 2.6e-119 433.7 297 75.8
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 7.0e-109 399.1 467 50.7
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 8.9e-88 328.9 215 79.5
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.3e-80 304.3 215 70.7
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 7.1e-69 266.2 175 78.3
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 9.6e-58 229.2 243 56.8
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 1.9e-53 214.9 246 50.4
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 7.1e-53 213.0 218 56.9
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 6.6e-51 206.5 221 51.1
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 4.3e-50 203.8 104 90.4
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 2.2e-38 164.9 417 32.9
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 9.3e-37 159.5 173 52.6
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 1.3e-35 155.6 87 86.2
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.8e-35 155.2 87 86.2
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.5e-34 152.1 87 85.1
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 4.3e-34 150.6 86 90.7
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.1e-33 148.3 468 32.9
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 6.9e-32 143.3 107 68.2
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.1e-29 136.0 86 79.1
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.1e-24 119.4 113 56.6
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 1.8e-19 102.1 68 79.4
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 3.9e-19 100.9 68 77.9
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 5.1e-19 100.5 54 88.9
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 8.8e-19 99.8 55 87.3
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 1.1e-18 99.4 82 67.1
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 4.3e-18 97.4 82 68.3
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 4.8e-17 94.0 96 58.3
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 3.4e-15 87.8 49 89.8
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 1.0e-14 86.3 49 87.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 8.5e-14 83.2 201 32.8
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 9.4e-13 79.7 63 73.0
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 2.1e-12 78.6 87 54.0
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 7.9e-12 76.6 68 52.9
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 4.4e-10 70.9 67 58.2
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.4e-10 70.1 37 86.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 9.7e-10 69.7 105 45.7
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.8e-08 65.5 43 69.8
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 3.4e-07 61.2 44 65.9
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 3.8e-06 57.8 40 65.0
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 5.0e-06 57.4 33 90.9
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 6.5e-06 57.0 33 81.8


User provided reference genes

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