Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 2607.0 1267 100.0
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 2400.5 1268 91.4
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 2390.5 1268 90.5
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 2355.1 1268 89.8
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 2249.2 1269 84.7
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2248.4 1268 85.3
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2241.1 1268 84.9
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 2221.4 1274 84.3
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 2216.4 1270 83.2
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 2144.0 1273 81.4
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2067.4 1271 78.1
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2063.9 1271 78.0
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1942.9 1272 73.2
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1936.4 1273 73.4
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1926.0 1275 72.5
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1921.4 1274 72.4
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1919.4 1275 72.5
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1906.3 1276 72.3
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1905.2 1274 72.0
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1894.4 1275 71.4
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1892.9 1272 71.5
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1889.8 1274 70.8
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1883.6 1275 71.1
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1878.6 1275 70.9
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1875.5 1273 71.5
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1873.2 1275 70.5
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1865.5 1279 70.4
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1861.3 1280 70.2
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1860.9 1277 70.6
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1854.0 1275 70.1
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1853.6 1273 69.8
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1853.6 1276 70.3
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1851.6 1269 69.3
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1848.2 1275 69.8
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1847.8 1275 70.0
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1847.4 1275 69.9
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1842.0 1301 68.8
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1837.4 1277 69.0
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1820.8 1236 71.5
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1815.0 1271 68.6
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1804.6 1285 67.7
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1768.4 1270 67.6
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1767.3 1271 66.3
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1755.7 1272 66.6
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1751.5 1269 66.8
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1746.9 1278 66.9
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1746.5 1274 66.5
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1746.1 1277 65.6
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1743.8 1273 66.7
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1743.8 1272 66.4
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1741.5 1242 66.7
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1737.2 1279 65.1
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1726.1 1273 65.5
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1725.7 1290 65.1
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1724.5 1371 60.9
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1720.7 1278 65.3
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1717.2 1278 65.6
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1717.2 1280 65.1
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1713.0 1354 60.6
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1708.7 1280 65.3
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1706.0 1277 65.2
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1703.7 1273 64.5
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1701.0 1270 65.1
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1692.6 1273 63.9
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1685.2 1277 64.1
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1682.5 1275 63.4
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1682.5 1270 64.6
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1682.2 1271 63.9
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1678.3 1278 64.2
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1677.5 1279 64.7
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1677.1 1279 64.6
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1675.6 1277 64.5
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1671.0 1285 64.4
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1667.5 1283 64.3
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1663.7 1275 61.5
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1662.1 1275 61.3
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1662.1 1274 63.7
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1649.8 1286 62.0
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1635.9 1271 61.4
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1634.4 1365 59.3
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1617.8 1274 63.0
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1615.9 1193 66.6
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1614.7 1181 65.6
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1614.4 1213 63.9
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1583.2 1267 61.6
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1562.4 1034 73.0
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1561.2 1276 61.2
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1513.0 1041 69.3
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1506.9 1042 68.7
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1489.6 1276 56.3
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1454.5 1271 55.5
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1444.9 1048 66.3
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1439.1 1271 58.3
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1361.7 1273 53.8
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1353.6 1272 56.1
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1284.2 1219 52.6
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1267.3 1160 55.0
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1240.7 940 64.6
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1191.0 831 68.1
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1177.2 828 68.0
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1167.5 875 62.2
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1167.1 941 61.7
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1164.8 811 70.7
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1127.9 830 63.9
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1122.5 1189 49.1
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1099.7 941 59.1
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1099.7 1295 46.6
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1095.9 1323 46.3
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1087.8 1318 45.1
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1079.7 760 67.5
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1077.8 777 65.1
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.0e-310 1070.5 1321 45.9
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.1e-296 1021.9 691 70.2
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 7.0e-296 1021.1 762 66.5
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 3.5e-295 1018.8 1143 47.9
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.0e-225 788.1 1458 34.9
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 3.2e-224 783.1 563 66.1
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.2e-223 781.2 622 61.1
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.3e-212 744.6 501 71.1
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.4e-203 714.5 613 54.0
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 2.8e-191 673.7 496 62.3
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 5.0e-185 652.9 470 68.9
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 4.9e-132 476.9 395 61.8
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 5.5e-131 473.4 367 65.4
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 7.4e-128 463.0 319 70.5
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 7.2e-123 446.4 365 60.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 2.3e-97 361.7 1388 26.2
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.2e-83 314.7 1234 25.1
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.2e-82 312.8 259 59.5
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 2.9e-47 195.3 236 46.2
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 4.6e-45 188.0 156 61.5
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 4.3e-43 181.4 147 57.1
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.6e-29 136.3 101 66.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 1.9e-22 112.8 78 65.4
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.4e-14 86.7 68 57.4
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.6e-13 83.2 46 82.6
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 6.7e-12 77.8 53 69.8
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 1.5e-11 76.6 53 67.9
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 1.1e-09 70.5 56 58.9
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.4e-09 70.1 62 59.7
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 1.8e-09 69.7 50 64.0
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 4.1e-09 68.6 48 66.7
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 6.9e-09 67.8 48 66.7
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 1.2e-08 67.0 135 29.6
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 1.5e-08 66.6 48 64.6
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 1.5e-08 66.6 48 64.6
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 1.5e-08 66.6 48 64.6
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 1.5e-08 66.6 48 64.6
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 1.5e-08 66.6 48 64.6
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 2.0e-08 66.2 156 29.5
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 2.6e-08 65.9 48 64.6
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 2.6e-08 65.9 48 64.6
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.6e-08 65.9 95 35.8
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.0e-07 63.9 96 38.5
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.3e-07 63.5 133 33.8
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 2.9e-07 62.4 144 28.5
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 2.9e-07 62.4 117 30.8
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.9e-07 62.4 80 43.8
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 5.0e-07 61.6 230 28.7
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 1.1e-06 60.5 117 31.6
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 4.2e-06 58.5 67 41.8
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 9.4e-06 57.4 50 54.0


User provided reference genes

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