Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g026440 Pisum sativum HOM05D016485 ORTHO05D000844 3.4e-133 478.4 256 100.0
Psat2g026480 Pisum sativum HOM05D016485 ORTHO05D000844 1.6e-130 469.5 256 98.0
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 8.4e-47 191.4 338 43.2
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 8.7e-36 154.8 276 42.8
Psat5g261640 Pisum sativum HOM05D003093 ORTHO05D004301 5.8e-32 142.1 80 93.8
Psat5g289920 Pisum sativum HOM05D001027 ORTHO05D000844 6.2e-26 122.1 78 89.7
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 2.8e-18 96.7 60 86.7
Psat0s2746g0040 Pisum sativum HOM05D000552 ORTHO05D013105 5.1e-12 75.9 55 70.9
Medtr2g099610 Medicago truncatula HOM05D001027 ORTHO05D000844 2.5e-11 73.6 57 66.7
Psat0s2808g0040 Pisum sativum HOM05D016485 ORTHO05D326088 2.2e-10 70.5 44 81.8
Psat0s2808g0080 Pisum sativum HOM05D016485 ORTHO05D324425 2.2e-10 70.5 44 81.8
Psat0s5886g0080 Pisum sativum HOM05D016485 ORTHO05D325633 6.3e-10 68.9 44 79.5
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 6.3e-10 68.9 44 79.5
Psat6g038360 Pisum sativum HOM05D016485 ORTHO05D329104 8.2e-10 68.6 44 79.5
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 6.9e-09 65.5 56 62.5
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 6.9e-09 65.5 56 62.5
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 9.1e-09 65.1 44 72.7
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 9.1e-09 65.1 44 72.7
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 9.1e-09 65.1 44 72.7
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 9.1e-09 65.1 44 72.7
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 9.1e-09 65.1 44 72.7
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.2e-08 64.7 41 75.6
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.2e-08 64.7 41 75.6
Ca_23343_v3 Cicer arietinum L. HOM05D001027 ORTHO05D000844 2.6e-08 63.5 116 40.5
Lj5g0001171 Lotus japonicus HOM05D001027 ORTHO05D000844 2.6e-08 63.5 82 46.3
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 2.6e-08 63.5 56 60.7
Phvul.010G136100 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 2.6e-08 63.5 67 50.7
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 3.4e-08 63.2 44 70.5
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 3.4e-08 63.2 44 70.5
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 3.4e-08 63.2 44 70.5
TPR.G7889 Trifolium pratense HOM05D000208 ORTHO05D000130 3.4e-08 63.2 65 49.2
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 4.5e-08 62.8 44 70.5
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 4.5e-08 62.8 56 58.9
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 4.5e-08 62.8 44 68.2
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 4.5e-08 62.8 44 72.7
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 5.9e-08 62.4 44 70.5
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 5.9e-08 62.4 44 70.5
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 7.7e-08 62.0 44 70.5
Ca_01220_v3 Cicer arietinum L. HOM05D001027 ORTHO05D000844 1.0e-07 61.6 37 78.4
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.0e-07 61.6 44 68.2
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.0e-07 61.6 44 68.2
Psat6g163840 Pisum sativum HOM05D003093 ORTHO05D004301 1.0e-07 61.6 44 70.5
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 1.0e-07 61.6 44 68.2
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 1.0e-07 61.6 56 58.9
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 1.3e-07 61.2 44 68.2
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-07 61.2 44 68.2
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-07 61.2 44 68.2
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-07 61.2 44 68.2
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-07 61.2 44 68.2
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-07 61.2 44 68.2
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.3e-07 61.2 44 68.2
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 1.3e-07 61.2 44 68.2
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 1.3e-07 61.2 44 68.2
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 1.3e-07 61.2 44 68.2
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 1.7e-07 60.8 56 57.1
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 1.7e-07 60.8 44 68.2
CiPaw.01G222500 Carya illinoinensis HOM05D001027 ORTHO05D000844 1.7e-07 60.8 115 34.8
Lj3g0001508 Lotus japonicus HOM05D001027 ORTHO05D000844 1.7e-07 60.8 76 48.7
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 1.7e-07 60.8 80 46.2
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.7e-07 60.8 56 57.1
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 2.2e-07 60.5 44 65.9
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.2e-07 60.5 44 63.6
Lalb_Chr14g0372681 Lupinus albus HOM05D001027 ORTHO05D000844 2.2e-07 60.5 39 69.2
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 2.2e-07 60.5 44 68.2
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 2.2e-07 60.5 44 63.6
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 2.9e-07 60.1 44 63.6
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 2.9e-07 60.1 44 63.6
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 2.9e-07 60.1 44 65.9
Sed0000203 Sechium edule HOM05D001027 ORTHO05D000844 2.9e-07 60.1 99 38.4
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 2.9e-07 60.1 44 65.9
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 2.9e-07 60.1 56 55.4
VMungo0331G0759 Vigna mungo HOM05D001027 ORTHO05D000844 2.9e-07 60.1 70 51.4
VMungo0331G0967 Vigna mungo HOM05D001027 ORTHO05D000844 2.9e-07 60.1 67 49.3
arahy.Tifrunner.gnm1.ann1.U3IALR Arachis hypogaea HOM05D001027 ORTHO05D000844 3.8e-07 59.7 68 50.0
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 3.8e-07 59.7 44 70.5
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 3.8e-07 59.7 44 70.5
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 3.8e-07 59.7 44 70.5
Psat6g153360 Pisum sativum HOM05D000274 ORTHO05D007831 3.8e-07 59.7 29 100.0
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 3.8e-07 59.7 44 70.5
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 3.8e-07 59.7 44 68.2
FvH4_2g04410 Fragaria vesca HOM05D003093 ORTHO05D004301 5.0e-07 59.3 79 45.6
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 5.0e-07 59.3 44 61.4
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 5.0e-07 59.3 44 61.4
Atru.chr12.588 Acer truncatum HOM05D003093 ORTHO05D004301 6.5e-07 58.9 44 63.6
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 6.5e-07 58.9 44 63.6
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 6.5e-07 58.9 44 63.6
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 6.5e-07 58.9 44 63.6
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 6.5e-07 58.9 44 63.6
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 6.5e-07 58.9 44 63.6
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 6.5e-07 58.9 44 63.6
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 6.5e-07 58.9 44 68.2
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 6.5e-07 58.9 44 68.2
Psat4g184920 Pisum sativum HOM05D001027 ORTHO05D000844 6.5e-07 58.9 102 43.1
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 8.5e-07 58.5 44 65.9
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 8.5e-07 58.5 44 61.4
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 8.5e-07 58.5 44 61.4
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 8.5e-07 58.5 44 65.9
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 8.5e-07 58.5 41 65.9
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 8.5e-07 58.5 41 65.9
Manes.04G141700 Manihot esculenta HOM05D001027 ORTHO05D000844 8.5e-07 58.5 38 68.4
Phvul.010G136000 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 8.5e-07 58.5 106 45.3
vmacro07110 Vaccinium macrocarpon HOM05D003093 ORTHO05D004301 8.5e-07 58.5 44 65.9
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 1.1e-06 58.2 56 53.6
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.1e-06 58.2 44 63.6
Nn6g35538 Nelumbo nucifera HOM05D001027 ORTHO05D000844 1.1e-06 58.2 78 44.9
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 1.4e-06 57.8 44 63.6
arahy.Tifrunner.gnm1.ann1.V3922U Arachis hypogaea HOM05D001027 ORTHO05D000844 1.4e-06 57.8 68 48.5
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.4e-06 57.8 44 63.6
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.4e-06 57.8 44 63.6
Dinv42342 Davidia involucrata HOM05D001027 ORTHO05D000844 1.4e-06 57.8 80 43.8
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 1.4e-06 57.8 43 65.1
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 1.4e-06 57.8 44 63.6
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 1.9e-06 57.4 44 63.6
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.9e-06 57.4 41 65.9
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 1.9e-06 57.4 32 81.2
QL05p009530 Quercus lobata HOM05D001027 ORTHO05D000844 1.9e-06 57.4 114 34.2
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 1.9e-06 57.4 44 63.6
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 1.9e-06 57.4 44 61.4
arahy.Tifrunner.gnm1.ann1.9QPF88 Arachis hypogaea HOM05D001027 ORTHO05D000844 2.5e-06 57.0 104 39.4
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 2.5e-06 57.0 44 61.4
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 2.5e-06 57.0 44 61.4
Gohir.A05G136700 Gossypium hirsutum HOM05D001027 ORTHO05D000844 2.5e-06 57.0 38 65.8
Gohir.D05G138700 Gossypium hirsutum HOM05D001027 ORTHO05D000844 2.5e-06 57.0 38 65.8
Gorai.009G143000 Gossypium raimondii HOM05D001027 ORTHO05D000844 2.5e-06 57.0 38 65.8
TPR.G6579 Trifolium pratense HOM05D001027 ORTHO05D000844 2.5e-06 57.0 33 81.8
Lalb_Chr24g0396531 Lupinus albus HOM05D001027 ORTHO05D000844 3.2e-06 56.6 94 39.4
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 3.2e-06 56.6 44 63.6
Thecc.06G115200 Theobroma cacao HOM05D001027 ORTHO05D000844 3.2e-06 56.6 77 42.9
TWI36G1153 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 3.2e-06 56.6 112 39.3
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 4.2e-06 56.2 56 51.8
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 4.2e-06 56.2 44 65.9
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 4.2e-06 56.2 158 31.0
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 5.5e-06 55.8 55 52.7
Cpa.g.sc25.81 Carica papaya HOM05D001027 ORTHO05D000844 5.5e-06 55.8 60 46.7
MELO3C013078.2 Cucumis melo HOM05D001027 ORTHO05D000844 5.5e-06 55.8 99 38.4
CsaV3_3G043700 Cucumis sativus L. HOM05D000250 ORTHO05D000625 5.5e-06 55.8 99 38.4
Duzib235G1421 Durio zibethinus HOM05D001027 ORTHO05D000844 5.5e-06 55.8 100 39.0
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 5.5e-06 55.8 44 63.6
Psat4g060320 Pisum sativum HOM05D002956 ORTHO05D008031 5.5e-06 55.8 37 70.3
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 5.5e-06 55.8 41 68.3
Actinidia26042 Actinidia chinensis HOM05D001027 ORTHO05D000844 7.2e-06 55.5 69 47.8
Actinidia39707 Actinidia chinensis HOM05D001027 ORTHO05D000844 7.2e-06 55.5 40 65.0
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 7.2e-06 55.5 44 61.4
Oeu009484.1 Olea europaea HOM05D003093 ORTHO05D004301 7.2e-06 55.5 44 63.6
Psat1g171600 Pisum sativum HOM05D001876 ORTHO05D002002 7.2e-06 55.5 35 77.1
SalBow6G3916 Salvia bowleyana HOM05D001027 ORTHO05D000844 7.2e-06 55.5 84 40.5
arahy.Tifrunner.gnm1.ann1.7IDQ3T Arachis hypogaea HOM05D001027 ORTHO05D000844 9.4e-06 55.1 68 47.1
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 9.4e-06 55.1 97 38.1
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 9.4e-06 55.1 44 63.6
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 9.4e-06 55.1 43 65.1
Psat5g293120 Pisum sativum HOM05D001876 ORTHO05D002002 9.4e-06 55.1 35 77.1


User provided reference genes

Program Settings