Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 1.3e-105 386.3 193 100.0
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 4.8e-95 351.3 185 95.7
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.5e-85 319.7 185 87.6
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 3.5e-82 308.5 187 82.4
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.6e-77 292.4 187 78.1
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.6e-77 292.4 187 78.1
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 4.5e-77 291.6 187 78.1
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.7e-76 289.7 187 78.1
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.2e-76 289.3 187 77.5
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.0e-73 280.4 185 76.8
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 5.1e-73 278.1 186 77.4
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 5.1e-73 278.1 183 76.5
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 1.5e-72 276.6 186 74.2
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.8e-71 272.3 184 74.5
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 3.7e-71 271.9 185 74.1
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 6.3e-71 271.2 185 72.4
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 2.4e-70 269.2 185 71.9
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 2.4e-70 269.2 186 73.7
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 2.4e-70 269.2 187 74.9
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 3.1e-70 268.9 186 73.7
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 3.1e-70 268.9 186 73.7
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 3.1e-70 268.9 186 71.5
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 9.1e-70 267.3 187 74.9
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.2e-69 266.9 185 71.9
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 2.0e-69 266.2 186 72.0
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 2.6e-69 265.8 185 73.5
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 4.5e-69 265.0 186 72.0
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 5.9e-69 264.6 185 71.4
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 7.7e-69 264.2 185 72.4
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.3e-68 263.5 188 69.7
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.7e-68 263.1 186 74.2
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 2.2e-68 262.7 185 70.8
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 3.8e-68 261.9 185 75.7
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 3.8e-68 261.9 186 71.5
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 3.8e-68 261.9 185 71.9
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 5.0e-68 261.5 186 71.0
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 8.5e-68 260.8 185 71.4
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.1e-67 260.4 186 72.6
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 1.4e-67 260.0 185 71.4
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 7.2e-67 257.7 186 70.4
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 2.7e-66 255.8 186 70.4
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 2.7e-66 255.8 185 68.1
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 4.7e-66 255.0 186 71.5
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 6.1e-66 254.6 211 64.5
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.0e-65 253.8 187 71.1
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.4e-65 253.4 186 69.4
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 3.9e-65 251.9 186 69.9
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.5e-64 250.0 186 68.8
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 5.7e-64 248.1 187 69.5
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 9.7e-64 247.3 187 69.5
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 2.2e-63 246.1 186 68.3
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 2.2e-63 246.1 187 66.3
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 6.3e-63 244.6 186 68.8
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.8e-62 243.0 186 66.7
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 2.4e-62 242.7 152 78.3
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.2e-61 240.4 188 68.6
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.9e-61 238.0 186 64.5
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 1.0e-60 237.3 185 65.9
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 1.7e-60 236.5 186 64.5
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.7e-60 236.5 188 65.4
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.0e-60 235.0 186 64.5
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 8.5e-60 234.2 186 64.5
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 8.5e-60 234.2 181 68.0
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 1.5e-59 233.4 181 68.0
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.9e-59 233.0 182 65.9
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 1.9e-59 233.0 187 64.2
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 2.5e-59 232.6 187 64.2
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 3.2e-59 232.3 187 64.2
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 9.4e-59 230.7 186 64.5
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 1.6e-58 229.9 186 64.5
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 2.1e-58 229.6 186 62.4
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 2.7e-58 229.2 186 64.0
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.7e-58 228.4 186 62.9
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 4.7e-58 228.4 187 62.0
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 6.1e-58 228.0 186 63.4
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 1.4e-57 226.9 183 63.4
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.0e-57 225.7 186 61.8
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 3.9e-57 225.3 221 58.8
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 2.0e-56 223.0 186 61.3
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 3.3e-56 222.2 186 61.8
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 3.3e-56 222.2 186 63.4
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 4.4e-56 221.9 185 63.2
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.3e-55 220.3 186 60.2
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.3e-55 220.3 187 61.5
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 2.2e-55 219.5 188 62.2
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 8.2e-55 217.6 186 62.4
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.4e-54 216.9 187 63.1
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.4e-54 216.9 188 61.7
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 1.8e-54 216.5 188 61.2
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 1.8e-54 216.5 186 60.2
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 2.4e-54 216.1 185 63.2
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 2.4e-54 216.1 186 59.7
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 7.0e-54 214.5 186 60.8
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 7.0e-54 214.5 186 60.8
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 9.1e-54 214.2 190 61.1
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.6e-53 213.4 190 59.5
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 2.6e-53 212.6 188 60.1
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.2e-52 209.5 177 63.3
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 2.9e-52 209.1 186 60.8
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 3.8e-52 208.8 186 57.5
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.8e-52 208.8 187 58.3
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 5.0e-52 208.4 186 59.7
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 6.5e-52 208.0 181 62.4
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 6.5e-52 208.0 187 61.0
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 8.5e-52 207.6 188 60.1
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.1e-51 207.2 186 56.5
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.1e-51 207.2 187 61.0
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 9.4e-51 204.1 185 60.0
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 2.1e-50 203.0 184 57.1
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 4.7e-50 201.8 187 60.4
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 1.2e-48 197.2 181 56.4
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 2.6e-48 196.1 146 67.1
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 1.7e-47 193.4 185 55.1
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 4.8e-47 191.8 178 58.4
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 6.3e-47 191.4 188 53.7
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 7.0e-46 188.0 183 55.7
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.7e-45 186.0 152 65.1
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 2.7e-45 186.0 151 64.2
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 2.1e-42 176.4 131 69.5
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 2.1e-42 176.4 116 74.1
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 4.0e-41 172.2 180 52.2
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 1.5e-40 170.2 120 69.2
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 9.8e-40 167.5 180 51.7
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.5e-37 159.1 179 48.0
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.7e-36 156.8 176 51.1
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 3.0e-33 146.0 175 49.1
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 4.4e-32 142.1 187 42.2
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 5.7e-32 141.7 181 42.5
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.1e-30 137.5 147 51.7
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 7.0e-30 134.8 145 51.0
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.0e-29 133.3 168 47.0
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 3.6e-26 122.5 186 40.9
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 8.9e-25 117.9 195 40.5
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 8.6e-20 101.3 176 33.5
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 1.5e-19 100.5 181 37.6
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.9e-19 100.1 135 44.4
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 3.4e-16 89.4 90 54.4
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 3.4e-16 89.4 90 54.4
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 1.7e-15 87.0 90 53.3
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 8.3e-15 84.7 73 54.8
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 1.6e-13 80.5 173 34.7
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 7.8e-13 78.2 76 48.7
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.0e-12 77.8 59 67.8
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 5.1e-12 75.5 35 97.1
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 1.2e-10 70.9 123 41.5
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 1.5e-08 63.9 57 61.4
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 3.4e-08 62.8 58 55.2
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 5.8e-08 62.0 176 27.8
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 6.4e-07 58.5 176 29.5


User provided reference genes

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